Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009683.1 Kokia drynarioides strain JFW-HI SEQ_124401, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 84036
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 31 characters in sequence are not A, C, G, or T
Found at i:1086 original size:20 final size:20
Alignment explanation
Indices: 1050--1087 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1040 AGACTAATAG
*
1050 AAATAACTGAAATATAAAAA
1 AAATAACTGAAAAATAAAAA
1070 AAATAAACT-AAAAATAAA
1 AAAT-AACTGAAAAATAAA
1088 TGATAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.74, C:0.05, G:0.03, T:0.18
Consensus pattern (20 bp):
AAATAACTGAAAAATAAAAA
Found at i:6229 original size:25 final size:23
Alignment explanation
Indices: 6188--6233 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
6178 CCAATTAGGG
6188 AATTATTATTTAGATTTAATTCA
1 AATTATTATTTAGATTTAATTCA
*
6211 AATTATCTTTTTAGAATTTAATT
1 AATTAT-TATTTAG-ATTTAATT
6234 TTGATATAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.54
Consensus pattern (23 bp):
AATTATTATTTAGATTTAATTCA
Found at i:12624 original size:13 final size:14
Alignment explanation
Indices: 12601--12636 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
12591 TCGACTCTTG
12601 AACCTTAAATCTCA
1 AACCTTAAATCTCA
12615 AACC-TAAATCTCA
1 AACCTTAAATCTCA
*
12628 AATCTTAAA
1 AACCTTAAA
12637 CCCTAAACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.47, C:0.25, G:0.00, T:0.28
Consensus pattern (14 bp):
AACCTTAAATCTCA
Found at i:16338 original size:14 final size:15
Alignment explanation
Indices: 16258--16340 Score: 60
Period size: 17 Copynumber: 5.2 Consensus size: 15
16248 GTCATCTATT
*
16258 TCTCTTTCGTTTTTC
1 TCTCTTTCATTTTTC
*
16273 AACATCTTTCATTTTTC
1 -TC-TCTTTCATTTTTC
* **
16290 CCTCTTTGTTTTCTTTGC
1 TCTCTTT-CATT-TTT-C
16308 ATCTCTTTCATTTTTC
1 -TCTCTTTCATTTTTC
16324 TCTCTTTCA-TTTTC
1 TCTCTTTCATTTTTC
16338 TCT
1 TCT
16341 TAAAATTTTC
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
14 8 0.15
15 14 0.26
16 5 0.09
17 18 0.33
18 3 0.06
19 6 0.11
ACGTcount: A:0.08, C:0.27, G:0.04, T:0.61
Consensus pattern (15 bp):
TCTCTTTCATTTTTC
Found at i:16912 original size:14 final size:16
Alignment explanation
Indices: 16881--16912 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
16871 TGGAAGAGAA
16881 GATAAAATTGTACAAG
1 GATAAAATTGTACAAG
16897 GATAAAA-TGT-CAAG
1 GATAAAATTGTACAAG
16911 GA
1 GA
16913 ACAACAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 3 0.19
16 7 0.44
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
GATAAAATTGTACAAG
Found at i:18393 original size:3 final size:3
Alignment explanation
Indices: 18387--18412 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
18377 GTAAAAAAAA
18387 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
18413 AGAAGTAGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:18796 original size:11 final size:11
Alignment explanation
Indices: 18782--18824 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
18772 AGTTAAATAT
18782 TATTTTATTAA
1 TATTTTATTAA
18793 TATTTTAATTAGA
1 TATTTT-ATTA-A
*
18806 TA-TTTATTAT
1 TATTTTATTAA
18816 TATTTTATT
1 TATTTTATT
18825 TAGAAAACTG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 2 0.07
11 16 0.57
12 7 0.25
13 3 0.11
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:18827 original size:23 final size:23
Alignment explanation
Indices: 18785--18828 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
18775 TAAATATTAT
18785 TTTATTAATATTTTAATTAGATA
1 TTTATTAATATTTTAATTAGATA
* *
18808 TTTATTATTATTTTATTTAGA
1 TTTATTAATATTTTAATTAGA
18829 AAACTGTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (23 bp):
TTTATTAATATTTTAATTAGATA
Found at i:23169 original size:15 final size:16
Alignment explanation
Indices: 23149--23186 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
23139 CCCTTTGATT
23149 TTTTGACTCTTCG-AC
1 TTTTGACTCTTCGAAC
23164 TTTTGAC-CTTCGAAC
1 TTTTGACTCTTCGAAC
*
23179 TTCTGACT
1 TTTTGACT
23187 TCTCGACATC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.16, C:0.26, G:0.13, T:0.45
Consensus pattern (16 bp):
TTTTGACTCTTCGAAC
Found at i:23749 original size:13 final size:14
Alignment explanation
Indices: 23718--23751 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
23708 TTAGAAACTA
23718 AGATCTATTTTAGT
1 AGATCTATTTTAGT
*
23732 AGATCTATTTT-TT
1 AGATCTATTTTAGT
23745 AGATCTA
1 AGATCTA
23752 AAAATTGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.42
14 11 0.58
ACGTcount: A:0.29, C:0.09, G:0.12, T:0.50
Consensus pattern (14 bp):
AGATCTATTTTAGT
Found at i:24706 original size:95 final size:93
Alignment explanation
Indices: 24607--24779 Score: 224
Period size: 95 Copynumber: 1.8 Consensus size: 93
24597 TTTCAAATCA
24607 AACCCCTTTATCCTTTTTTAAAAAGATTTTAAATCTTTTTCATTAACCA-TTTCTATCCG-TTTT
1 AACCCCTTTAT--TTTTTT-AAAAGATTTTAAATCTTTTTCATTAA-CATTTTCTATCCGTTTTT
24670 AAATCTAATTCTTTTTTTATTTCTTTTAAAAT
62 AAATCTAATTCTTTTTTTATTTCTTTTAAAAT
** * * *
24702 AACCCCTTTATTTTTTTTTAAGATTTTAAATCTTTTTTATTAATATTTTTTTATCCGTTTTTTAA
1 AACCCCTTTATTTTTTTAAAAGATTTTAAATCTTTTTCATTAACA-TTTTCTATCCG-TTTTTAA
*
24767 ATTTAATTCTTTT
64 ATCTAATTCTTTT
24780 ACTTTTTTAT
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
91 1 0.01
92 23 0.34
93 15 0.22
95 29 0.43
ACGTcount: A:0.27, C:0.14, G:0.02, T:0.57
Consensus pattern (93 bp):
AACCCCTTTATTTTTTTAAAAGATTTTAAATCTTTTTCATTAACATTTTCTATCCGTTTTTAAAT
CTAATTCTTTTTTTATTTCTTTTAAAAT
Found at i:27131 original size:27 final size:27
Alignment explanation
Indices: 27090--27157 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 27
27080 TATTTTGGAG
* *
27090 ATATT-TTTCATTAAT-TAATTAGTTAA
1 ATATTATTTTATTAATAT-ATTACTTAA
*
27116 ATATTATTTTATTAATATTTTACTTAA
1 ATATTATTTTATTAATATATTACTTAA
27143 ATATTTATTATTATT
1 ATA-TTATT-TTATT
27158 TTATTTAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 5 0.14
27 19 0.54
28 6 0.17
29 5 0.14
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (27 bp):
ATATTATTTTATTAATATATTACTTAA
Found at i:27147 original size:13 final size:11
Alignment explanation
Indices: 27120--27162 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
27110 AGTTAAATAT
27120 TATTTTATTAA
1 TATTTTATTAA
27131 TATTTTACTTAA
1 TATTTTA-TTAA
*
27143 -ATATTTATTAT
1 TAT-TTTATTAA
27154 TATTTTATT
1 TATTTTATT
27163 TAGAAAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:29708 original size:72 final size:72
Alignment explanation
Indices: 29622--29905 Score: 505
Period size: 72 Copynumber: 3.9 Consensus size: 72
29612 TTTCCTCCAG
*
29622 TTTACATATAGATGTCTTGCACATACTCTATGCTCAACTCTTGGCAACAACTCAGAAATCTTCTC
1 TTTACATATAGATGTCTTGCACAGACTCTATGCTCAACTCTTGGCAACAACTCAGAAATCTTCTC
29687 CATCAAT
66 CATCAAT
*
29694 TTTACATATAGATGTCTTGCACAGACTCTATGCTCAACTCTTGGCAACAACTCAAAAATCTTCTC
1 TTTACATATAGATGTCTTGCACAGACTCTATGCTCAACTCTTGGCAACAACTCAGAAATCTTCTC
29759 CATCAAT
66 CATCAAT
* * * *
29766 TTTACATATAGATGTCTTGCACAGACTCTATGCTCAACTCTTAGCAACAACTTAGAAAACTTCTA
1 TTTACATATAGATGTCTTGCACAGACTCTATGCTCAACTCTTGGCAACAACTCAGAAATCTTCTC
29831 CATCAAT
66 CATCAAT
*
29838 TTTACATATAGATGTCTTGCACAGACTCTATGCTCAACTCTTGGCAACAACTTAGAAATCTTCTC
1 TTTACATATAGATGTCTTGCACAGACTCTATGCTCAACTCTTGGCAACAACTCAGAAATCTTCTC
29903 CAT
66 CAT
29906 TAATCCTTAA
Statistics
Matches: 202, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 202 1.00
ACGTcount: A:0.32, C:0.25, G:0.10, T:0.33
Consensus pattern (72 bp):
TTTACATATAGATGTCTTGCACAGACTCTATGCTCAACTCTTGGCAACAACTCAGAAATCTTCTC
CATCAAT
Found at i:31722 original size:13 final size:13
Alignment explanation
Indices: 31704--31728 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31694 ATAAATTCTA
31704 ATATACATACATG
1 ATATACATACATG
31717 ATATACATACAT
1 ATATACATACAT
31729 ATTTTAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.04, T:0.32
Consensus pattern (13 bp):
ATATACATACATG
Found at i:31795 original size:15 final size:15
Alignment explanation
Indices: 31775--31806 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
31765 CATACATTAA
*
31775 ACATAACAGTAATAT
1 ACATAACAATAATAT
31790 ACATAACAATAATAT
1 ACATAACAATAATAT
31805 AC
1 AC
31807 CACATAACAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.56, C:0.16, G:0.03, T:0.25
Consensus pattern (15 bp):
ACATAACAATAATAT
Found at i:31849 original size:4 final size:4
Alignment explanation
Indices: 31840--31899 Score: 95
Period size: 4 Copynumber: 15.0 Consensus size: 4
31830 AATATCCATA
*
31840 ACAT ACAT ACAT ACAT ACAT ACAT ATAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
31888 AACA- ACAT ACAT
1 -ACAT ACAT ACAT
31900 GCGGTTAAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
3 3 0.06
4 46 0.88
5 3 0.06
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.25
Consensus pattern (4 bp):
ACAT
Found at i:32501 original size:23 final size:20
Alignment explanation
Indices: 32474--32526 Score: 61
Period size: 23 Copynumber: 2.5 Consensus size: 20
32464 AAGTTTTAAG
32474 AAATATATTCAAAAAATAATTA
1 AAATATATT-AAAAAAT-ATTA
32496 ATAATATAATTAAAAAATATTA
1 A-AATAT-ATTAAAAAATATTA
*
32518 AAAAATATT
1 AAATATATT
32527 TAAATAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
20 3 0.11
21 4 0.14
22 6 0.21
23 12 0.43
24 3 0.11
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (20 bp):
AAATATATTAAAAAATATTA
Found at i:32517 original size:10 final size:10
Alignment explanation
Indices: 32478--32526 Score: 53
Period size: 10 Copynumber: 4.5 Consensus size: 10
32468 TTTAAGAAAT
32478 ATATTCAAAAA
1 ATATT-AAAAA
*
32489 ATAATTAATAAT
1 AT-ATTAA-AAA
32501 ATAATTAAAAA
1 AT-ATTAAAAA
32512 ATATTAAAAA
1 ATATTAAAAA
32522 ATATT
1 ATATT
32527 TAAATAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
10 13 0.38
11 8 0.24
12 13 0.38
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (10 bp):
ATATTAAAAA
Found at i:32756 original size:2 final size:2
Alignment explanation
Indices: 32749--32792 Score: 72
Period size: 2 Copynumber: 22.0 Consensus size: 2
32739 AATACCTTAA
32749 AG AG AG AG AG A- ATG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG A-G AG AG AG AG AG AG AG AG AG AG AG AG AG AG
32791 AG
1 AG
32793 GATATCCTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 1 0.03
2 38 0.95
3 1 0.03
ACGTcount: A:0.50, C:0.00, G:0.48, T:0.02
Consensus pattern (2 bp):
AG
Found at i:34335 original size:19 final size:19
Alignment explanation
Indices: 34307--34363 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
34297 AAAAATTACC
*
34307 AAAAAATCAAAATAATTT-T
1 AAAAATTCAAAAT-ATTTAT
*
34326 TAAAATTCAAAATATTTAT
1 AAAAATTCAAAATATTTAT
*
34345 AAAAATTCCAAA-ATTTAT
1 AAAAATTCAAAATATTTAT
34363 A
1 A
34364 TTTTAAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 11 0.33
19 22 0.67
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:39811 original size:80 final size:80
Alignment explanation
Indices: 39525--39823 Score: 361
Period size: 80 Copynumber: 3.7 Consensus size: 80
39515 CCAACAATTA
* * * **
39525 TGGCACCTAGTGCCTAGCGGA-ATAACCGCGAA-AGTGAGCCCAGCTCTAGTTGGATT-AACCAA
1 TGGCACCCAGTGCCTAGCGGATA-AACCAC-AATTGTGAGCCCAGCTCTAGTCAG-TTAAACCAA
*
39587 CAAATATCCGTCAAGTCT
63 CAAATATCCGTCAAATCT
* * * * * * * * *
39605 TAGCACCCAATGCTTAGCGGATAAACCGCAAATGTGAGCTCAGCTCCAATCAATTAAACCAACAA
1 TGGCACCCAGTGCCTAGCGGATAAACCACAATTGTGAGCCCAGCTCTAGTCAGTTAAACCAACAA
*
39670 ATATCTGTCAAATCT
66 ATATCCGTCAAATCT
* * * *
39685 TGGCACCTAGTGCCTAGCAGATAAACCGCAATTGTGAGCCCAGCTCTAGTCGGTTAAACCAACAA
1 TGGCACCCAGTGCCTAGCGGATAAACCACAATTGTGAGCCCAGCTCTAGTCAGTTAAACCAACAA
39750 ATATCCGTCAAATCT
66 ATATCCGTCAAATCT
*
39765 TGGCACCCAGTGCCTAGCGGATAAACCATAATTGTGAGCCCAGCTCTAGTCAGTTAAAC
1 TGGCACCCAGTGCCTAGCGGATAAACCACAATTGTGAGCCCAGCTCTAGTCAGTTAAAC
39824 TGACAACATA
Statistics
Matches: 186, Mismatches: 30, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
79 4 0.02
80 181 0.97
81 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (80 bp):
TGGCACCCAGTGCCTAGCGGATAAACCACAATTGTGAGCCCAGCTCTAGTCAGTTAAACCAACAA
ATATCCGTCAAATCT
Found at i:45505 original size:111 final size:112
Alignment explanation
Indices: 45310--45528 Score: 395
Period size: 111 Copynumber: 2.0 Consensus size: 112
45300 CGAACTATTA
45310 CAGCGGAGAAGAAGGAAGAGTTGACGAAATGGCTGGAGGAACTATTGAAGGCCGACAGAGAGGAT
1 CAGCGGAGAAGAAGGAAGAGTTGACGAAATGGCTGGAGGAACTATTGAAGGCCGACAGAGAGGAT
45375 GATGTGTTAACAGAAATCATTGAAACTAAAATTCACCTAAATTTTGG
66 GATGTGTTAACAGAAATCATTGAAACTAAAATTCACCTAAATTTTGG
* *
45422 CAGCGGAGAAGAAGGAAGAGTTGACGAAATGGTTGGA-GAACTATTGAAGGTCGACAGAGAGGAT
1 CAGCGGAGAAGAAGGAAGAGTTGACGAAATGGCTGGAGGAACTATTGAAGGCCGACAGAGAGGAT
* *
45486 GATGTGTTGACAGAAATCATTGACACTAAAATTCACCTAAATT
66 GATGTGTTAACAGAAATCATTGAAACTAAAATTCACCTAAATT
45529 GGGAGATCGA
Statistics
Matches: 103, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
111 67 0.65
112 36 0.35
ACGTcount: A:0.38, C:0.12, G:0.28, T:0.21
Consensus pattern (112 bp):
CAGCGGAGAAGAAGGAAGAGTTGACGAAATGGCTGGAGGAACTATTGAAGGCCGACAGAGAGGAT
GATGTGTTAACAGAAATCATTGAAACTAAAATTCACCTAAATTTTGG
Found at i:51867 original size:15 final size:16
Alignment explanation
Indices: 51829--51867 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
51819 CATAAGAATA
51829 TAATTTAGTGTTAATT
1 TAATTTAGTGTTAATT
*
51845 TAACTTAGT-TTAATT
1 TAATTTAGTGTTAATT
*
51860 TAGTTTAG
1 TAATTTAG
51868 AACACTAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.31, C:0.03, G:0.13, T:0.54
Consensus pattern (16 bp):
TAATTTAGTGTTAATT
Found at i:69913 original size:17 final size:17
Alignment explanation
Indices: 69893--69927 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
69883 GAAAACTATA
69893 ATCATTTCAAAATGTTT
1 ATCATTTCAAAATGTTT
* *
69910 ATCATTTCTAAATTTTT
1 ATCATTTCAAAATGTTT
69927 A
1 A
69928 CCATGTCTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.11, G:0.03, T:0.51
Consensus pattern (17 bp):
ATCATTTCAAAATGTTT
Found at i:77576 original size:16 final size:16
Alignment explanation
Indices: 77555--77585 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77545 ACAATTATGT
*
77555 AAATATTATTAAAACC
1 AAATATTAGTAAAACC
77571 AAATATTAGTAAAAC
1 AAATATTAGTAAAAC
77586 AATCTAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.10, G:0.03, T:0.29
Consensus pattern (16 bp):
AAATATTAGTAAAACC
Done.