Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009686.1 Kokia drynarioides strain JFW-HI SEQ_124404, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93405

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4232--4289
16
3.5
17
78
19
52
67
1
8
22
1.27
5970--6292
45
7.4
43
78
7
256
27
15
25
31
1.96
5994--6225
89
2.6
88
83
6
247
27
18
22
31
1.97
6099--6426
42
7.9
41
72
14
178
25
15
24
34
1.95
6074--6375
79
3.6
81
77
12
229
25
17
24
33
1.96
6456--7187
40
18.5
40
84
4
905
25
16
23
34
1.95
8375--8431
7
7.6
8
86
7
59
3
21
0
75
0.95
8370--8448
15
5.3
15
77
11
65
3
20
0
75
0.95
9027--9053
13
2.1
13
100
0
54
7
14
44
33
1.73
14645--14683
6
6.5
6
87
0
51
46
0
30
23
1.53
19114--19189
36
2.1
36
82
0
89
14
30
25
30
1.95
21029--21133
52
2.0
52
88
3
158
49
7
2
40
1.46
21271--21479
40
5.2
40
86
3
260
23
15
23
37
1.93
22667--22723
7
7.6
8
86
7
59
3
21
0
75
0.95
22662--22740
15
5.3
15
77
11
65
3
20
0
75
0.95
23319--23345
13
2.1
13
100
0
54
7
14
44
33
1.73
28937--28975
6
6.5
6
87
0
51
46
0
30
23
1.53
33406--33481
36
2.1
36
82
0
89
14
30
25
30
1.95
35321--35425
52
2.0
52
88
3
158
49
7
2
40
1.46
35548--35602
28
2.0
28
89
3
85
52
7
16
23
1.68
35550--35613
28
2.3
27
81
7
74
54
7
17
20
1.67
43217--43262
20
2.3
19
85
10
65
41
0
0
58
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46321--46381
22
2.7
23
74
7
70
57
14
0
27
1.38
47594--47654
23
2.7
21
83
16
86
24
1
26
47
1.61
59276--59300
13
1.9
13
100
0
50
12
8
48
32
1.69
59247--59377
56
2.3
56
85
2
165
21
19
33
25
1.97
59325--59421
44
2.2
44
92
0
158
20
19
35
24
1.96
59269--59513
100
2.5
97
81
6
255
20
17
35
27
1.95
59437--59557
40
3.0
40
79
4
127
20
14
33
30
1.93
60043--60121
40
2.0
40
84
0
104
39
18
17
24
1.92
61432--61473
20
2.1
20
82
8
50
19
2
2
76
1.01
72259--72337
41
2.0
40
90
7
124
21
2
11
64
1.38
74637--74683
20
2.3
20
85
3
58
29
4
6
59
1.41
77359--77401
19
2.3
19
100
0
86
44
4
23
27
1.73
79834--79904
28
2.5
28
97
0
133
59
12
5
22
1.54
79834--79913
28
2.9
28
90
3
99
57
12
6
23
1.58
92613--92689
39
2.0
39
100
0
154
49
15
6
28
1.69

Tables:   1

The End!