genome.fa.s9688.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009688.1 Kokia drynarioides strain JFW-HI SEQ_124406, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112772

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59--89	2	16.0	2	93	6	55	48	0	0	51	1.00
9138--9183	16	2.8	16	90	3	65	28	0	0	71	0.86
12040--12113	23	3.2	24	78	12	59	52	0	0	47	1.00
12077--12113	7	5.1	7	93	6	65	56	0	0	43	0.99
12448--12507	23	2.7	22	79	5	59	50	0	1	48	1.11
12822--12861	19	2.1	19	90	4	62	35	10	5	50	1.58
16218--16258	22	1.9	21	90	5	64	53	2	17	26	1.56
17674--17719	22	2.1	22	95	0	83	43	4	21	30	1.72
29409--29659	136	1.8	137	84	6	350	35	12	18	33	1.89
29925--29963	17	2.3	18	86	8	55	53	5	38	2	1.37
33328--33363	13	2.7	13	95	4	63	30	0	16	52	1.44
34886--34942	29	1.9	30	89	3	89	40	10	5	43	1.62
39493--40812	440	3.0	440	89	0	1980	32	24	20	22	1.98
42227--42310	42	2.0	41	90	2	132	28	3	5	61	1.36
49079--49203	66	1.9	66	96	3	234	41	0	4	54	1.19
49079--49230	59	2.4	61	88	8	209	45	0	4	50	1.22
55568--55656	40	2.2	40	82	7	101	33	19	13	33	1.90
55696--55736	20	2.0	20	90	9	66	29	19	12	39	1.88
55596--55761	60	2.8	60	86	1	226	33	21	15	29	1.94
55724--56962	39	31.4	38	73	12	545	32	24	17	25	1.97
55716--56886	158	7.4	157	76	8	779	32	25	17	25	1.97
55928--56866	119	7.9	115	76	10	430	31	24	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56382--57002	80	7.9	77	76	8	355	30	23	19	26	1.98
58227--58253	12	2.2	12	100	0	54	14	0	7	77	0.97
63103--63158	29	1.9	29	89	7	87	37	23	19	19	1.94
67233--67304	36	1.9	38	94	5	130	44	5	13	36	1.68
72895--72989	50	1.9	50	91	4	156	34	15	16	32	1.91
79626--79664	18	2.2	18	86	4	53	56	7	10	25	1.59
81129--81307	88	2.0	88	96	0	331	41	13	21	22	1.89
94434--94559	63	2.0	63	90	3	200	24	15	11	48	1.78
97948--97979	6	5.5	6	92	7	57	0	68	0	31	0.90
103238--103276	18	2.2	18	85	0	51	17	17	0	64	1.30
109444--109804	188	1.9	189	93	0	616	21	13	20	44	1.86
111501--111587	44	2.0	44	93	0	147	22	13	9	54	1.68

Tables:   1

The End!