genome.fa.s969.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01000969.1 Kokia drynarioides strain JFW-HI SEQ_112149, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79629

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13--44	4	7.8	4	93	6	55	0	28	0	71	0.86
13--45	13	2.6	13	95	4	59	0	30	0	69	0.88
2685--2896	30	7.3	30	79	10	201	39	21	2	36	1.68
2685--2891	87	2.4	84	82	11	247	39	20	2	37	1.68
4940--5007	31	2.2	31	89	0	100	27	22	10	39	1.86
13110--13214	50	2.1	50	89	0	156	38	18	24	19	1.93
13351--13563	91	2.3	92	88	3	324	30	23	20	24	1.99
13351--13563	45	4.7	46	81	5	247	30	23	20	24	1.99
14924--15164	90	2.7	88	83	8	290	38	19	3	38	1.70
14928--15164	60	4.0	60	81	3	257	39	19	3	37	1.69
14924--15167	30	8.2	30	80	5	219	38	19	4	37	1.71
16244--16282	14	2.7	14	84	4	51	71	2	2	23	1.10
16628--16682	28	2.0	29	85	7	78	30	1	1	65	1.13
22253--22683	75	5.8	75	84	2	494	37	22	20	19	1.95
22297--22651	35	9.6	35	63	21	82	37	21	21	19	1.94
24085--24116	16	2.0	16	93	0	55	25	3	0	71	1.00
24223--24282	27	2.2	27	87	3	84	45	10	0	45	1.37
24444--24482	19	2.0	20	85	5	53	28	7	2	61	1.37
25734--25961	51	4.4	51	89	2	323	30	24	14	30	1.94
30462--30678	105	2.1	105	97	0	409	50	6	28	14	1.68
39903--39977	37	2.0	37	100	0	150	37	5	13	44	1.66
46079--46251	86	2.0	86	97	0	328	40	21	2	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46245--46271	4	6.8	4	100	0	54	0	22	0	77	0.76
63155--63183	2	14.5	2	100	0	58	48	0	51	0	1.00
64772--64851	33	2.4	33	83	4	99	36	13	25	25	1.92
65443--65474	15	2.1	15	100	0	64	21	40	0	37	1.54
73803--73838	19	1.9	19	94	5	65	13	5	0	80	0.88
73807--73885	18	4.6	18	72	20	62	13	6	1	78	1.00
73847--73887	22	1.9	21	90	5	64	12	4	0	82	0.81
75146--75191	25	1.9	23	86	8	65	54	4	4	36	1.40
75144--75199	25	2.2	26	75	15	64	48	8	3	39	1.52
76214--76289	13	6.2	12	67	21	50	6	18	1	73	1.11
76215--76267	23	2.5	20	88	11	72	7	18	0	73	1.06
76222--76267	20	2.4	19	82	10	58	8	17	0	73	1.07
76950--77013	6	10.3	6	76	15	51	79	1	4	14	0.96

Tables:   1

The End!