Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009695.1 Kokia drynarioides strain JFW-HI SEQ_124414, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2031
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.31


Found at i:1716 original size:195 final size:194

Alignment explanation


    Indices: 1332--1779  Score: 521
    Period size: 195  Copynumber: 2.3  Consensus size: 194

       1322 TACTAGTACT

                           *       *            *       *   *                
       1332 CGATGCTGCTCACACAAGCTGTCAAGGACTCGCAACGTATGCAGCACCCCAGCCATCGGTACAGT
          1 CGATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCAGTACCTCAGCCATC-GTACAGT

             **                                 *                   *        
       1397 GCCTATCTGTACTATAAACTATTCCCTAACAATGCTGCTCACACGAGCTGTCGAGAGTATGCATA
         65 GAATATCTGTACTATAAACTATTCCCTAACAATGCTCCTCACACGAGCTGTCGAGAATATGCATA

                   *  *                                                  *   
       1462 AAGCATAGTCCTAGCCATCGTAAGGCCTATAATCCATTTAGGATCCATATCTCTTTCCCGAGTCA
        130 AAGCATAATCATAGCCATCGTAAGGCCTATAATCCATTTAGGATCCATATCTCTTTCCCGACTCA

                       *      *            *                            *    
       1527 CGATGCTGCTCTCACGAGTTGTCGAGGACTCACAACATATGCAGTACCTCAGCCATCG-ATA-T-
          1 CGATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCAGTACCTCAGCCATCGTACAGTG

                     *          *         *                                  
       1589 AATATCTGTGC-ATATAACTGTTCCCTAACGATGCTCCTCACACGAGCTGTCGAGAATATGCACT
         66 AATATCTGTACTATA-AACTATTCCCTAACAATGCTCCTCACACGAGCTGTCGAGAATATGCA--

              *                       *     *           *    * * *           
       1653 TATA-CATAAAT-ATAAGCCATCGTAGGGCCTGTAATCCATTCTTGGATTCTTTTCTCATTTCCC
        128 TAAAGCAT-AATCAT-AGCCATCGTAAGGCCTATAATCCATT-TAGGATCCATATCTC-TTTCCC

                  
       1716 GACTCA
        189 GACTCA

            *      *                        *                         
       1722 TGATGCTACTCACACGAGCTGTCGAGGACTCGTAACATATGCAGTACCTCAGCCATCG
          1 CGATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCAGTACCTCAGCCATCG

       1780 CGTCGATTTC


Statistics
Matches: 214,  Mismatches: 32, Indels: 14
        0.82            0.12        0.05

Matches are distributed among these distances:
 190    3  0.01
 191   51  0.24
 192    5  0.02
 193   31  0.14
 194   12  0.06
 195  112  0.52

ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27


Consensus pattern (194 bp):   
CGATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCAGTACCTCAGCCATCGTACAGTG
AATATCTGTACTATAAACTATTCCCTAACAATGCTCCTCACACGAGCTGTCGAGAATATGCATAA
AGCATAATCATAGCCATCGTAAGGCCTATAATCCATTTAGGATCCATATCTCTTTCCCGACTCA
Done.