Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009697.1 Kokia drynarioides strain JFW-HI SEQ_124416, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9844
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.32


Found at i:2733 original size:15 final size:16

Alignment explanation


    Indices: 2713--2742  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       2703 TATTTATTAA

                            
       2713 AAATTAAAAA-ATAAT
          1 AAATTAAAAATATAAT

                           
       2728 AAATTAAAAATATAA
          1 AAATTAAAAATATAA

       2743 CATTGTAAAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15   10  0.71
  16    4  0.29

ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27


Consensus pattern (16 bp):   
AAATTAAAAATATAAT
Done.