Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009698.1 Kokia drynarioides strain JFW-HI SEQ_124417, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 769

Length: 1282
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36


Found at i:608 original size:18 final size:19

Alignment explanation


    Indices: 587--628  Score: 68
    Period size: 18  Copynumber: 2.3  Consensus size: 19

        577 ATTAGTATTA

                            *  
        587 TTATTAATATTAA-AACAG
          1 TTATTAATATTAATAAAAG

                               
        605 TTATTAATATTAATAAAAG
          1 TTATTAATATTAATAAAAG

                 
        624 TTATT
          1 TTATT

        629 GAAACATTTT


Statistics
Matches: 22,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  18   13  0.59
  19    9  0.41

ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45


Consensus pattern (19 bp):   
TTATTAATATTAATAAAAG
Done.