Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000097.1 Kokia drynarioides strain JFW-HI SEQ_110725, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9107
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33


Found at i:1976 original size:13 final size:11

Alignment explanation


    Indices: 1943--1973  Score: 53
    Period size: 11  Copynumber: 2.8  Consensus size: 11

       1933 TTTAAAATTT

                    *  
       1943 AAAAATTACTA
          1 AAAAATTATTA

                       
       1954 AAAAATTATTA
          1 AAAAATTATTA

                     
       1965 AAAAATTAT
          1 AAAAATTAT

       1974 ATTTTTTAAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  11   19  1.00

ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32


Consensus pattern (11 bp):   
AAAAATTATTA
Done.