genome.fa.s9701.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009701.1 Kokia drynarioides strain JFW-HI SEQ_124420, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  182335

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1969--2019	24	2.1	24	85	0	66	25	9	7	56	1.58
3962--4014	24	2.2	24	83	6	63	35	13	3	47	1.61
14545--14590	12	3.3	14	79	17	51	67	0	30	2	1.03
27172--27231	21	2.9	21	82	0	75	28	11	21	38	1.89
27548--27775	77	2.9	76	83	7	242	46	11	11	29	1.76
29814--29842	3	9.7	3	100	0	58	65	0	34	0	0.93
34345--34369	12	2.1	12	100	0	50	60	16	0	24	1.36
34585--34702	49	2.4	49	89	0	182	27	33	1	38	1.67
35884--35979	41	2.3	41	83	0	111	22	28	6	42	1.78
37398--37464	30	2.2	30	84	5	82	32	10	22	34	1.88
38423--38873	180	2.5	181	78	8	461	49	10	12	27	1.74
38931--39104	45	3.9	45	88	4	235	21	14	32	31	1.93
39272--39327	24	2.4	24	87	3	78	26	10	7	55	1.60
39336--39370	11	3.3	11	88	8	54	28	0	2	68	1.04
44092--44215	49	2.5	48	92	5	196	25	28	2	44	1.67
56689--56730	18	2.3	18	81	18	52	2	35	0	61	1.09
58702--58728	9	3.0	9	100	0	54	0	11	33	55	1.35
58769--58811	18	2.4	18	84	7	52	23	20	27	27	1.99
61520--61544	9	2.8	9	100	0	50	36	0	8	56	1.29
74466--74546	41	2.0	41	90	0	126	32	28	1	38	1.65
79265--79707	194	2.3	194	84	2	568	27	17	27	27	1.98
79975--80017	23	1.9	22	81	13	52	55	0	13	30	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95590--95664	28	2.7	28	95	0	132	53	8	5	33	1.53
104748--104864	41	2.6	47	75	22	131	24	28	4	42	1.73
104768--104863	41	2.3	41	89	3	140	26	29	4	40	1.74
106858--106925	34	2.0	34	100	0	136	26	5	0	67	1.13
106869--106922	15	3.3	15	72	18	54	24	7	0	68	1.15
107956--108002	3	16.0	3	78	12	53	0	29	2	68	1.02
107960--108002	18	2.5	17	92	7	77	0	30	2	67	1.03
132817--132886	37	1.9	36	91	2	113	22	28	14	34	1.93
137772--137808	18	2.0	19	89	5	58	72	5	13	8	1.24
143927--143969	18	2.4	18	96	0	77	13	20	9	55	1.66
148659--148700	20	2.1	19	86	8	57	23	7	16	52	1.68
153423--153456	15	2.3	15	94	0	59	17	17	0	64	1.29
154999--155117	49	2.4	50	82	6	136	52	9	4	33	1.52
157696--158311	82	7.6	82	81	5	615	45	11	12	30	1.76
158803--158966	50	3.2	50	87	3	229	51	9	4	34	1.55
162724--162755	2	16.0	2	100	0	64	50	50	0	0	1.00
162914--162987	21	3.5	20	75	14	62	41	22	10	24	1.86
163644--163747	24	4.3	24	83	7	131	30	20	21	27	1.98
163646--163740	48	2.0	48	89	4	147	28	22	21	28	1.99
170485--170516	3	10.7	3	100	0	64	65	0	34	0	0.93
172078--172201	49	2.5	49	87	5	187	22	32	2	42	1.67
175923--176002	41	2.0	41	94	0	142	30	30	1	38	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177636--177685	18	2.7	18	81	3	64	72	2	2	24	1.06
178671--178715	22	2.0	22	100	0	90	13	13	26	46	1.80

Tables:   1

The End!