genome.fa.s9704.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009704.1 Kokia drynarioides strain JFW-HI SEQ_124423, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  190543

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4702--4743	20	2.0	21	86	4	59	47	2	0	50	1.14
8478--8561	43	2.0	43	85	4	116	30	9	2	57	1.44
15039--15111	23	3.2	22	80	18	78	8	4	15	72	1.23
15096--15162	12	5.6	12	74	12	57	8	5	14	70	1.32
15106--15236	56	2.3	56	78	7	149	10	4	17	67	1.37
15121--15192	32	2.2	32	82	5	81	11	4	15	69	1.32
15182--15243	20	2.9	21	76	11	54	8	4	22	64	1.40
15344--15438	50	2.0	47	82	12	113	27	1	8	63	1.30
17644--17757	25	4.9	23	76	14	108	49	19	21	9	1.77
23896--23979	42	2.0	42	83	0	105	25	39	15	20	1.91
28836--28871	15	2.2	17	90	9	58	27	0	5	66	1.13
46153--46203	11	4.5	11	76	11	50	50	1	1	45	1.24
46140--46271	61	2.1	65	87	5	191	53	2	0	43	1.18
46195--46250	15	3.9	15	75	15	55	60	0	0	39	0.97
46188--46303	27	4.3	26	72	12	85	50	1	0	47	1.11
46275--46331	18	3.3	18	69	18	57	47	0	3	49	1.18
46273--46348	34	2.2	34	88	6	109	43	0	2	53	1.14
46317--46379	15	4.1	15	74	8	63	42	0	4	52	1.22
47213--47238	6	4.3	6	100	0	52	80	0	0	19	0.71
51001--51231	121	1.9	120	91	0	381	31	19	9	40	1.82
59964--59992	7	4.1	7	100	0	58	27	41	13	17	1.87
61896--61969	19	3.8	19	76	13	62	32	5	1	60	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61896--61970	30	2.5	28	77	12	78	33	5	1	60	1.28
62449--62487	18	2.2	18	90	0	60	48	2	7	41	1.45
65580--65692	60	1.9	60	81	3	138	22	14	12	51	1.75
65883--65962	30	2.6	32	88	5	112	52	10	6	31	1.59
66389--66493	50	2.1	50	94	0	183	40	16	20	22	1.90
66603--66631	2	14.5	2	100	0	58	51	0	0	48	1.00
72988--73013	1	26.0	1	100	0	52	100	0	0	0	0.00
88611--88637	12	2.2	12	100	0	54	62	7	14	14	1.51
88971--89029	28	2.1	28	90	3	93	27	10	30	32	1.89
88984--89141	28	5.7	27	76	11	131	31	4	32	31	1.78
88981--89171	85	2.3	86	83	5	246	32	5	29	32	1.80
89018--89141	27	4.4	27	74	15	83	33	2	30	33	1.71
90992--91058	17	4.0	17	76	1	64	50	5	5	37	1.51
93030--93062	15	2.3	15	89	5	50	24	0	0	75	0.80
94874--94935	30	2.1	30	93	0	106	33	20	17	27	1.96
103943--103991	25	2.0	25	87	0	71	38	2	2	57	1.22
115855--115917	30	2.1	31	81	3	74	38	1	9	50	1.44
116560--116597	16	2.3	17	90	4	60	71	2	0	26	1.00
119132--119159	5	5.6	5	100	0	56	57	0	42	0	0.99
124333--124368	16	2.2	17	90	5	56	55	0	5	38	1.23
139085--139127	23	1.9	23	85	4	61	58	6	2	32	1.38
160560--160584	4	6.2	4	100	0	50	76	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183794--183849	29	1.9	29	81	0	67	30	5	14	50	1.65

Tables:   1

The End!