Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009708.1 Kokia drynarioides strain JFW-HI SEQ_124427, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4400
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33


Found at i:1815 original size:21 final size:23

Alignment explanation


    Indices: 1766--1815  Score: 59
    Period size: 24  Copynumber: 2.2  Consensus size: 23

       1756 TTCCTAAAAT

                                    
       1766 TGGAGAAATAAGAAAGGTGAGAGA
          1 TGGAGAAATAAGAAAGGT-AGAGA

            *            *         
       1790 AGGAGAAATAAG-GAGGT-GAGA
          1 TGGAGAAATAAGAAAGGTAGAGA

                 
       1811 TGGAG
          1 TGGAG

       1816 TGGGACATAA


Statistics
Matches: 23,  Mismatches: 3, Indels: 3
        0.79            0.10        0.10

Matches are distributed among these distances:
  21    8  0.35
  23    4  0.17
  24   11  0.48

ACGTcount: A:0.46, C:0.00, G:0.42, T:0.12


Consensus pattern (23 bp):   
TGGAGAAATAAGAAAGGTAGAGA
Done.