Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000972.1 Kokia drynarioides strain JFW-HI SEQ_112155, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2644
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38


Found at i:2067 original size:20 final size:21

Alignment explanation


    Indices: 2042--2092  Score: 70
    Period size: 20  Copynumber: 2.5  Consensus size: 21

       2032 AAAATTATAT

                           *     
       2042 AATAATTATTTT-AATAATTA
          1 AATAATTATTTTGAACAATTA

                                *
       2062 AATAATT-TTTTGAACAATTT
          1 AATAATTATTTTGAACAATTA

                       
       2082 AATAATTATTT
          1 AATAATTATTT

       2093 CGTAAAATTT


Statistics
Matches: 27,  Mismatches: 2, Indels: 3
        0.84            0.06        0.09

Matches are distributed among these distances:
  19    4  0.15
  20   20  0.74
  21    3  0.11

ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51


Consensus pattern (21 bp):   
AATAATTATTTTGAACAATTA
Done.