Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009720.1 Kokia drynarioides strain JFW-HI SEQ_124439, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1729
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.34


Found at i:1352 original size:40 final size:40

Alignment explanation


    Indices: 1296--1373  Score: 129
    Period size: 40  Copynumber: 1.9  Consensus size: 40

       1286 CTACTACCGA

                              * *                   
       1296 TACTTGACCAACAGGTATTGGTAGAAGTCCCCTAAAATAT
          1 TACTTGACCAACAGGTATCGATAGAAGTCCCCTAAAATAT

                       *                          
       1336 TACTTGACCAATAGGTATCGATAGAAGTCCCCTAAAAT
          1 TACTTGACCAACAGGTATCGATAGAAGTCCCCTAAAAT

       1374 GTTGAAAATA


Statistics
Matches: 35,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  40   35  1.00

ACGTcount: A:0.36, C:0.21, G:0.17, T:0.27


Consensus pattern (40 bp):   
TACTTGACCAACAGGTATCGATAGAAGTCCCCTAAAATAT
Done.