genome.fa.s9721.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009721.1 Kokia drynarioides strain JFW-HI SEQ_124440, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  197705

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3011--3044	17	1.9	18	88	5	52	20	2	29	47	1.65
18826--18864	16	2.4	16	86	0	51	61	0	0	38	0.96
19810--19877	9	7.3	9	80	8	57	36	0	1	61	1.05
19867--19918	20	2.7	19	73	5	50	44	1	3	50	1.31
20732--20766	18	1.9	18	94	0	61	37	0	20	42	1.52
21473--21803	164	2.0	164	88	1	484	32	18	18	29	1.95
26105--26179	36	2.0	37	94	5	134	32	5	6	56	1.48
26591--26632	21	2.0	21	85	4	57	66	2	11	19	1.34
28511--28568	26	2.2	26	81	6	62	31	1	6	60	1.33
28834--28866	2	16.5	2	100	0	66	51	0	0	48	1.00
32877--32925	25	2.0	25	95	0	89	57	4	12	26	1.53
36348--36397	24	2.0	25	85	11	68	46	2	0	52	1.12
38951--38990	21	1.9	21	94	0	71	27	30	12	30	1.93
46271--46301	16	1.9	16	93	0	53	61	9	19	9	1.54
51963--51994	16	2.1	15	94	5	55	12	21	15	50	1.77
62749--62800	19	2.9	17	75	13	50	38	1	0	59	1.08
63432--63489	29	2.0	29	83	6	73	48	13	1	36	1.53
79873--79904	13	2.5	13	100	0	64	6	15	18	59	1.57
82859--82901	22	2.0	22	100	0	86	23	0	30	46	1.52
84050--84078	14	2.0	15	93	6	51	13	0	10	75	1.04
84739--84793	27	2.0	29	86	13	80	45	1	7	45	1.41
88019--88056	18	2.0	20	90	10	62	7	10	15	65	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90729--90802	36	2.1	36	92	0	121	14	5	64	14	1.45
90733--90788	12	4.7	12	71	8	51	16	7	67	8	1.39
91450--91543	33	2.9	32	81	7	102	45	1	1	52	1.15
91462--91542	30	2.5	31	82	7	83	45	1	1	51	1.16
93763--93814	19	2.7	20	80	14	63	59	1	0	38	1.08
93763--93820	19	3.1	18	76	16	55	56	1	1	39	1.19
93866--93947	23	3.6	22	75	15	69	37	2	3	56	1.30
93888--93947	22	2.7	21	80	14	59	38	3	1	56	1.26
94034--94074	20	2.0	20	95	0	73	29	0	4	65	1.13
94543--94584	20	2.0	21	81	9	50	52	7	9	30	1.61
94717--94749	5	6.6	5	100	0	66	81	0	0	18	0.68
94717--94768	10	5.2	10	86	9	52	76	0	3	19	0.93
94841--94865	12	2.1	12	100	0	50	40	8	0	52	1.31
105047--105142	49	2.0	49	95	0	174	38	23	9	28	1.86
105382--105410	14	2.1	14	100	0	58	20	51	0	27	1.47
108250--108317	26	2.6	26	100	0	136	19	2	13	64	1.40
121272--121317	22	2.0	23	84	12	60	54	4	2	39	1.32
121362--121420	7	8.3	7	76	12	50	69	1	0	28	0.98
128279--128358	39	2.1	39	87	0	115	31	12	21	35	1.90
132134--132221	46	2.0	45	86	8	126	21	15	12	50	1.77
140321--140351	15	2.1	15	93	0	53	77	0	0	22	0.77
142995--143021	2	13.5	2	100	0	54	0	0	48	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144856--145060	102	2.0	102	100	0	410	32	13	19	34	1.91
147835--147896	32	1.9	32	90	0	97	9	12	29	48	1.73
150703--151852	48	24.0	48	69	8	376	13	21	34	31	1.91
151321--151407	39	2.2	39	83	4	104	5	20	31	42	1.76
162140--162175	3	12.0	3	100	0	72	33	0	0	66	0.92
183502--183558	22	2.6	22	83	5	71	22	29	21	26	1.99
183708--183755	24	2.0	24	96	4	89	56	12	12	18	1.67
184966--184999	16	2.1	16	94	0	59	44	5	26	23	1.76
187621--188024	57	7.1	56	74	10	286	29	17	8	44	1.79
187628--188024	113	3.5	113	78	9	437	28	17	9	44	1.79
187628--188024	117	3.5	113	79	11	402	28	17	9	44	1.79
188210--188363	57	2.7	57	86	3	211	49	8	14	27	1.72
188888--188959	32	2.2	34	87	9	105	40	2	4	52	1.35
189736--189792	3	19.0	3	78	7	62	61	1	1	35	1.17
193788--193824	18	2.1	18	94	0	65	18	10	10	59	1.59
194232--194522	49	6.0	49	76	6	268	39	18	24	17	1.92
194244--194562	98	3.3	98	86	3	423	39	18	23	17	1.92
194248--194522	147	1.9	146	81	6	331	39	17	25	17	1.92
195042--195085	15	2.8	16	82	10	63	43	0	2	54	1.12
195016--195085	32	2.1	34	87	10	101	42	1	4	51	1.30
195276--195431	77	2.0	76	96	2	294	26	41	13	17	1.87
197050--197355	29	10.5	28	80	9	292	33	23	3	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197050--197355	59	5.2	57	80	8	287	33	23	3	39	1.72
197049--197353	88	3.5	88	86	4	395	33	22	3	40	1.72
197261--197464	108	1.9	108	83	8	263	36	26	3	33	1.74
197399--197468	28	2.4	29	88	2	97	38	27	2	31	1.71

Tables:   1

The End!