Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009723.1 Kokia drynarioides strain JFW-HI SEQ_124442, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2731
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Found at i:623 original size:216 final size:216
Alignment explanation
Indices: 1--2731 Score: 2918
Period size: 216 Copynumber: 12.7 Consensus size: 216
* * * *
1 TTTTTAATTCAAAGGCAAAAACTTGTTTACAAAATGACAAACCTTTTAGACCAAATGATGCTACT
1 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATT
* * * * *
66 TCCCCAGCATGTAATGTTCGAAAAATTGCACAAAGGATTGGATCGTCTTGCATACTTTAAGGAAC
66 TCCCTAGCATGTAATGTTCGAAAAATTACTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
* * * * * * * * *
131 CGAAGCTATAAATGAACTCGTAAAAGTTCAACATGTTCGAAATTTCATCCAAGTACCAAGAGAGA
131 CAAATCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
*
196 AACAATTCTCACATAAATAAG
196 AACAATTCTCACGTAAATAAG
* * * * * * * *
217 TTTTTAATTCAAAGATCAAAAACATGTTCATAAAATGAAAAACTATTTAAACCAAATGATGCGAT
1 TTTTTAATTCAAAG-GCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGAT
* * * * * * *
282 TTTCATCGCATGGAATATTTCG-AAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTCAGGA
65 TTCCCTAGCATGTAAT-GTTCGAAAAATTACTCGAAGGATTGGATCGTCTTGAATACTTTAAGGA
* * * * * * * * * **
346 ACTAGATTTAAAAAACAACTCGTAAAAGTTTC-ACAATTTCGTAAGCTCATCCATCAACCAAGAG
129 ACCAAATCTATAAAAGAACTCGTAAAAG-TTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAG
*
410 AGATACAATTCTCACGTAAATAAG
193 AGAAACAATTCTCACGTAAATAAG
*
434 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACT
1 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATT
* * * * *
499 TCCCGAGCATGTAATGTTCCAAAAATTACTCGAAGGATTGGATTGTCATGAATACGTTAAGGAAC
66 TCCCTAGCATGTAATGTTCGAAAAATTACTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
564 CAAATCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
131 CAAATCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
* * *
629 CATAATTCTCAC-TTAATAAG
196 AACAATTCTCACGTAAATAAG
** * * * *
649 TTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAGAAACTATTTAGATCAAATGATACGATT
1 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATT
** * * * * * *
714 TCCCTCCCATGGAATGTTCAAAAAATTACTCGAAGGAATGGATCATCTTGAACACTTTAAGGAGC
66 TCCCTAGCATGTAATGTTCGAAAAATTACTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
** * * * * *
779 CTGATCTAAAAAAGAACTAGTAAAAGTTTGAAAAGTTCGGAGGTTCGTCCAAGAACCAACG-GAG
131 CAAATCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAA-GAGAG
843 AAACAATTCTCACGTAAATAAG
195 AAACAATTCTCACGTAAATAAG
* *
865 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGAACAAATGATGCGACT
1 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATT
* * * * *
930 TCCCGAGCATGTAATGTTCGAAAAATTACTCGAAAGATTGGATTGTCATGAATACGTTAAGGAAC
66 TCCCTAGCATGTAATGTTCGAAAAATTACTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
* *
995 CAAATCTATAAAAGAACTCATAAAAGTTCGACAAGTTC---A-----TCCAATAACCAAGAGAGA
131 CAAATCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
* *
1052 CACAATTCTCACAT-AATAAG
196 AACAATTCTCACGTAAATAAG
* ** * * * * * * *
1072 TATTTAATTCAAAGATCAAAACTTGTTTACAAAATAAAAAACTATTAAGATCAAATGATACAATT
1 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATT
* * * * * *
1137 TCCCTCGCATG-AATGTTCGAAAAATTACTCAAAGGAATGGATCATCTTGAACACTTTAAGGAGC
66 TCCCTAGCATGTAATGTTCGAAAAATTACTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
** * * * *
1201 CTGATCTAAAAAAGAACTAGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAACG-GAG
131 CAAATCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAA-GAGAG
1265 AAACAATTCTCACGTAAATAAG
195 AAACAATTCTCACGTAAATAAG
* *
1287 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGAACAAATGATGCGACT
1 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATT
* * * * *
1352 TCCCGAGCATGTAATGTTCGAAAAATTACTAGAAGGATTGGATTGTCATGAATACGTTAAGGAAC
66 TCCCTAGCATGTAATGTTCGAAAAATTACTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
* * *
1417 CAAATCTATAAAAGAACTCATAAAAGTTTG---A---C--AAGTTCGTCCAATAACCAAGAGAGA
131 CAAATCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
* *
1474 CACAATTCTCACAT-AATAAG
196 AACAATTCTCACGTAAATAAG
* ** * * * * *
1494 TATTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTAAGATCAAATGATACGATT
1 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATT
* *** * * * * *
1559 TCCCTCGCATG-AATGTAAAAAAAATTACTCAAAGGAATGGATCATCTTGAACACTTTAAGGAGC
66 TCCCTAGCATGTAATGTTCGAAAAATTACTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
** * * * *
1623 CTGATCTAAAAAAGAACTAGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAACG-GAG
131 CAAATCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAA-GAGAG
*
1687 AAACAATTCTTACGTAAATAAG
195 AAACAATTCTCACGTAAATAAG
* * *
1709 TTTTTAATTTAAAGGCCAAAACTTGTTTACAAAATGACAAACCTTTTAGACCAAATGATGCGACT
1 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATT
* * *
1774 TCCCAAGCATGTAATGTTCAAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
66 TCCCTAGCATGTAATGTTCGAAAAATTACTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
* * * * * *
1839 CGAAGCTATAAAAGAACTGGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCGAG-AGCAAGAGAGA
131 CAAATCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
* * *
1903 CACAATTCACACTTAAATAAG
196 AACAATTCTCACGTAAATAAG
** * **
1924 TTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTACTTAGACCAAATGATGCGATT
1 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATT
* * * ** * * *
1989 TCTCTCGCATGGAATGTTCGGTAAATTACTCGAAGAAATGGATCGTCTTGAACACTTTAAGGAAC
66 TCCCTAGCATGTAATGTTCGAAAAATTACTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
**** * * * * **
2054 TGGGTTTAAAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCACCAACCAAGAGAGA
131 CAAATCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
*
2119 AACAATTGTCACGTAAATAAG
196 AACAATTCTCACGTAAATAAG
* * * * * * * * **
2140 TTTTTAATTCAAAGGCAAAAACCTGTTTACAAAATGACAAACCTATAAGACGAAACGATGTGGCT
1 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATT
* * * * ** * *
2205 TCCCGAGCATGTAATGTTCGGAAAATTGCTTGAATTATTGTATCGTCTTGCATACTTTAAGGAAC
66 TCCCTAGCATGTAATGTTCGAAAAATTACTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
* * * *
2270 CAAAGCTATAAAAGAACTCAT-AAAGTTCGGCAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGA
131 CAAATCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
**
2334 AACAATTCTTGCGTAAATAAG
196 AACAATTCTCACGTAAATAAG
* ** * * * * *
2355 TTTATAATTCAAAGATCAAAACATGTTTACAAATTCAAAAAACTATTTAGACCAAATGATGCGAT
1 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAAT-GACAAACTTTTTAGACCAAATGATGCGAT
* * * *
2420 TTCCCTCGCATGGAATGTTTC-AAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGA
65 TTCCCTAGCATGTAATG-TTCGAAAAATTACTCGAAGGATTGGATCGTCTTGAATACTTTAAGGA
*** * * * * *
2484 ACTGGATTTGA-AAAAGAACTAGTAAAAGTTTGACAAGATCGGAAGTACGTCCAACG-ACCAAGA
129 ACCAAATCT-ATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAA-GAACCAAGA
2547 GA-AAATCAATTCTCACGTAAATAAG
192 GAGAAA-CAATTCTCACGTAAATAAG
* * * *
2572 TTTTTAATTCAAAGGCTAAAACATATTTACAAAATGACAAACTTTTTAGACCAAACGATGCGATT
1 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATT
* * * * * * * * *
2637 TCCCAAGCATGTAACGTTC-AGAAAATTGCTCGAAGTATTGTATCGGCTTGACTAATTTATGGAA
66 TCCCTAGCATGTAATGTTCGA-AAAATTACTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA
* ** *
2701 CCGAAGATATAAAAGAACTCATAAAAGTTCG
130 CCAAATCTATAAAAGAACTCGTAAAAGTTCG
Statistics
Matches: 2057, Mismatches: 417, Indels: 82
0.80 0.16 0.03
Matches are distributed among these distances:
206 141 0.07
207 142 0.07
208 61 0.03
209 2 0.00
210 1 0.00
212 1 0.00
213 1 0.00
214 61 0.03
215 597 0.29
216 791 0.38
217 251 0.12
218 8 0.00
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (216 bp):
TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATT
TCCCTAGCATGTAATGTTCGAAAAATTACTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
CAAATCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
AACAATTCTCACGTAAATAAG
Found at i:899 original size:431 final size:428
Alignment explanation
Indices: 1--2731 Score: 3620
Period size: 422 Copynumber: 6.4 Consensus size: 428
* * *
1 TTTTTAATTCAAAGGCAAAAACTTGTTTACAAAATGACAAACCTTTTAGACCAAATGATGCTACT
1 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACT
* * * *
66 TCCCCAGCATGTAATGTTCGAAAAATTGCACAAAGGATTGGATCGTCTTGCATACTTTAAGGAAC
66 TCCCGAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
* * * * * * * *
131 CGAAGCTATAAATGAACTCGTAAAAGTTCAACATGTTCGAAATTTCATCCAAGTACCAAGAGAGA
131 CAAAGCTATAAAAGAACTCATAAAAGTTCGACAAGTTCG-AAGTTCGTCCAAGAACCAAGAGAGA
* * * * *
196 AACAATTCTCACATAAATAAGTTTTTAATTCAAAGATCAAAAACATGTTCATAAAATGAAAAACT
195 CACAATTCTCAC-TTAATAAGTTTTTAATTCAAAGATC-AAAACTTGTTTACAAAATGAAAAACT
* * * * * *
261 ATTTAAACCAAATGATGCGATTTTCATCGCATGGAATATTTCGAAAATTACTCGAAGGAATGGAT
258 ATTTAGACCAAATGATACGATTTCCCTCGCATGGAAT-GTTCAAAAATTACTCGAAGGAATGGAT
* * * * * * * * * * *
326 CGTCTTGAATACTTTCAGGAACTAGATTTAAAAAACAACTCGTAAAAGTTTCACAATTTCGTAAG
322 CATCTTGAACACTTTAAGGAACTGGATCTAAAAAAGAACTAGTAAAAGTTTGAAAAGTTCGGAAG
* * ** *
391 CTCATCCATCAACCAAGAGAGATACAATTCTCACGTAAATAAG
387 TTCGTCCAAGAACCAAG-GAGAAACAATTCTCACGTAAATAAG
434 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACT
1 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACT
* * * * *
499 TCCCGAGCATGTAATGTTCCAAAAATTACTCGAAGGATTGGATTGTCATGAATACGTTAAGGAAC
66 TCCCGAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
* *
564 CAAATCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
131 CAAAGCTATAAAAGAACTCATAAAAGTTCGACAAGTTC-GAAGTTCGTCCAAGAACCAAGAGAGA
* *
629 CATAATTCTCACTTAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAGAAACTAT
195 CACAATTCTCACTTAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* *
694 TTAGATCAAATGATACGATTTCCCTCCCATGGAATGTTCAAAAAATTACTCGAAGGAATGGATCA
260 TTAGACCAAATGATACGATTTCCCTCGCATGGAATGTTC-AAAAATTACTCGAAGGAATGGATCA
* *
759 TCTTGAACACTTTAAGGAGCCT-GATCTAAAAAAGAACTAGTAAAAGTTTGAAAAGTTCGGAGGT
324 TCTTGAACACTTTAAGGA-ACTGGATCTAAAAAAGAACTAGTAAAAGTTTGAAAAGTTCGGAAGT
823 TCGTCCAAGAACCAACGGAGAAACAATTCTCACGTAAATAAG
388 TCGTCCAAGAACCAA-GGAGAAACAATTCTCACGTAAATAAG
*
865 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGAACAAATGATGCGACT
1 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACT
* * * * *
930 TCCCGAGCATGTAATGTTCGAAAAATTACTCGAAAGATTGGATTGTCATGAATACGTTAAGGAAC
66 TCCCGAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
* *
995 CAAATCTATAAAAGAACTCATAAAAGTTCGACAAGTTC--A-----TCCAATAACCAAGAGAGAC
131 CAAAGCTATAAAAGAACTCATAAAAGTTCGACAAGTTCGAAGTTCGTCCAAGAACCAAGAGAGAC
* * *
1053 ACAATTCTCACATAATAAGTATTTAATTCAAAGATCAAAACTTGTTTACAAAATAAAAAACTATT
196 ACAATTCTCACTTAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATT
* * * *
1118 AAGATCAAATGATACAATTTCCCTCGCAT-GAATGTTCGAAAAATTACTCAAAGGAATGGATCAT
261 TAGACCAAATGATACGATTTCCCTCGCATGGAATGTTC-AAAAATTACTCGAAGGAATGGATCAT
*
1182 CTTGAACACTTTAAGGAGCCT-GATCTAAAAAAGAACTAGTAAAAGTTTGAAAAGTTCGGAAGTT
325 CTTGAACACTTTAAGGA-ACTGGATCTAAAAAAGAACTAGTAAAAGTTTGAAAAGTTCGGAAGTT
1246 CGTCCAAGAACCAACGGAGAAACAATTCTCACGTAAATAAG
389 CGTCCAAGAACCAA-GGAGAAACAATTCTCACGTAAATAAG
*
1287 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGAACAAATGATGCGACT
1 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACT
* * * * *
1352 TCCCGAGCATGTAATGTTCGAAAAATTACTAGAAGGATTGGATTGTCATGAATACGTTAAGGAAC
66 TCCCGAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
* * *
1417 CAAATCTATAAAAGAACTCATAAAAGTTTG---A---C-AAGTTCGTCCAATAACCAAGAGAGAC
131 CAAAGCTATAAAAGAACTCATAAAAGTTCGACAAGTTCGAAGTTCGTCCAAGAACCAAGAGAGAC
* *
1475 ACAATTCTCACATAATAAGTATTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATT
196 ACAATTCTCACTTAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATT
* * ** *
1540 AAGATCAAATGATACGATTTCCCTCGCAT-GAATGTAAAAAAAATTACTCAAAGGAATGGATCAT
261 TAGACCAAATGATACGATTTCCCTCGCATGGAATGT-TCAAAAATTACTCGAAGGAATGGATCAT
*
1604 CTTGAACACTTTAAGGAGCCT-GATCTAAAAAAGAACTAGTAAAAGTTTGAAAAGTTCGGAAGTT
325 CTTGAACACTTTAAGGA-ACTGGATCTAAAAAAGAACTAGTAAAAGTTTGAAAAGTTCGGAAGTT
*
1668 CGTCCAAGAACCAACGGAGAAACAATTCTTACGTAAATAAG
389 CGTCCAAGAACCAA-GGAGAAACAATTCTCACGTAAATAAG
* *
1709 TTTTTAATTTAAAGGCCAAAACTTGTTTACAAAATGACAAACCTTTTAGACCAAATGATGCGACT
1 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACT
* *
1774 TCCCAAGCATGTAATGTTCAAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
66 TCCCGAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
* ** * *
1839 CGAAGCTATAAAAGAACTGGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCGAG-AGCAAGAGAGA
131 CAAAGCTATAAAAGAACTCATAAAAGTTCGACAAGTTCG-AAGTTCGTCCAAGAACCAAGAGAGA
*
1903 CACAATTCACACTTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTA
195 CACAATTCTCACTT-AATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTA
* * * ** *
1968 CTTAGACCAAATGATGCGATTTCTCTCGCATGGAATGTTCGGTAAATTACTCGAAGAAATGGATC
259 TTTAGACCAAATGATACGATTTCCCTCGCATGGAATGTTC-AAAAATTACTCGAAGGAATGGATC
* * * *
2033 GTCTTGAACACTTTAAGGAACTGGGTTTAAAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGT
323 ATCTTGAACACTTTAAGGAACTGGATCTAAAAAAGAACTAGTAAAAGTTTGAAAAGTTCGGAAGT
** *
2098 TCGTCCACCAACCAAGAGAGAAACAATTGTCACGTAAATAAG
388 TCGTCCAAGAACCAAG-GAGAAACAATTCTCACGTAAATAAG
* * * * * * * * *
2140 TTTTTAATTCAAAGGCAAAAACCTGTTTACAAAATGACAAACCTATAAGACGAAACGATGTGGCT
1 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACT
* * ** * *
2205 TCCCGAGCATGTAATGTTCGGAAAATTGCTTGAATTATTGTATCGTCTTGCATACTTTAAGGAAC
66 TCCCGAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
* *
2270 CAAAGCTATAAAAGAACTCAT-AAAGTTCGGCAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGA
131 CAAAGCTATAAAAGAACTCATAAAAGTTCGACAAGTTC-GAAGTTCGTCCAAGAACCAAGAGAGA
* ** * * * * *
2334 AACAATTCTTGCGTAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACAAATTCAAAAAACT
195 CACAATTCTCAC-TTAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAAT-GAAAAACT
*
2399 ATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTTCAAAAATTACTCGAAGGAATGGAT
258 ATTTAGACCAAATGATACGATTTCCCTCGCATGGAATG-TTCAAAAATTACTCGAAGGAATGGAT
* * * * *
2464 CGTCTTGAACACTTTAAGGAACTGGATTTGAAAAAGAACTAGTAAAAGTTTGACAAGATCGGAAG
322 CATCTTGAACACTTTAAGGAACTGGATCTAAAAAAGAACTAGTAAAAGTTTGAAAAGTTCGGAAG
*
2529 TACGTCCAACG-ACCAA-GAGAAAATCAATTCTCACGTAAATAAG
387 TTCGTCCAA-GAACCAAGGAG-AAA-CAATTCTCACGTAAATAAG
* * * * *
2572 TTTTTAATTCAAAGGCTAAAACATATTTACAAAATGACAAACTTTTTAGACCAAACGATGCGATT
1 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACT
* * * * * * * *
2637 TCCCAAGCATGTAACGTTC-AGAAAATTGCTCGAAGTATTGTATCGGCTTGACTAATTTATGGAA
66 TCCCGAGCATGTAATGTTCGA-AAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA
* *
2701 CCGAAGATATAAAAGAACTCATAAAAGTTCG
130 CCAAAGCTATAAAAGAACTCATAAAAGTTCG
Statistics
Matches: 2080, Mismatches: 184, Indels: 68
0.89 0.08 0.03
Matches are distributed among these distances:
416 1 0.00
417 1 0.00
419 1 0.00
422 686 0.33
423 104 0.05
425 1 0.00
428 2 0.00
429 22 0.01
430 121 0.06
431 635 0.31
432 311 0.15
433 194 0.09
434 1 0.00
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (428 bp):
TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACT
TCCCGAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
CAAAGCTATAAAAGAACTCATAAAAGTTCGACAAGTTCGAAGTTCGTCCAAGAACCAAGAGAGAC
ACAATTCTCACTTAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATT
TAGACCAAATGATACGATTTCCCTCGCATGGAATGTTCAAAAATTACTCGAAGGAATGGATCATC
TTGAACACTTTAAGGAACTGGATCTAAAAAAGAACTAGTAAAAGTTTGAAAAGTTCGGAAGTTCG
TCCAAGAACCAAGGAGAAACAATTCTCACGTAAATAAG
Done.