Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009725.1 Kokia drynarioides strain JFW-HI SEQ_124444, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1036
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39


Found at i:662 original size:215 final size:215

Alignment explanation


    Indices: 8--1036  Score: 1131
    Period size: 216  Copynumber: 4.8  Consensus size: 215

          1 TACTAAA

                           *       *    *                *               *   
          8 TCTTTTATAACTTCGTTTCCTGATAGTAGTCAA-GACGATCCATTTCTTCGACCAATTTTTCGAA
          1 TCTTTTATAACTTCGGTTCCTGAGAGTATTCAATG-CGATCCATTCCTTCGACCAATTTTTTGAA

                     *   *  *             *      *                           
         72 CATTCCATGATCGAGATATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
         65 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAA-AACTTTTG

                *                     *              **                   ** 
        137 GTCTATGAATTAAAAACTTTTTTACGAGAGAATTGTTTCTCAATTGGTTCTTGGACGAACTTTTG
        129 GTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCG

              *    *          *   
        202 AAGTTGTTAAACATTTACAAGT
        194 AACTTGTCAAACATTTACGAGT

            *           *  *                             *   *   *      *    
        224 ACTTTTATAACTCCGATTCCTGAGAGTATTCAA-GACGATCCATTTCTTTGACAAATTTTCTGAA
          1 TCTTTTATAACTTCGGTTCCTGAGAGTATTCAATG-CGATCCATTCCTTCGACCAATTTTTTGAA

            *       ** *                            *                        
        288 GATTCCATTATTGGGAAATCGCATCATTTGGTC-AAAATAATTTGTCATTTTGTAAATAACTTTT
         65 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAA-AGTTTGTCATTTTGTAAA-AACTTTT

                         *  *      *  * *        *      *                    
        352 GGTCTTTGAATTAGAAGCTTTTTCACATTAGAA-T-TCTCTCTCCTGGTTCTTGGACGAACTTCC
        128 GGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC

                                   
        415 GAACTTGTCAAACATTTACGAGT
        193 GAACTTGTCAAACATTTACGAGT

                          *               *                     **    ***    
        438 TCTTTTATAACTTCAGTTCCTGAGAGT-TTTAATGCGATCCATTCCTTCGACTTATTTCCCGAAC
          1 TCTTTTATAACTTCGGTTCCTGAGAGTATTCAATGCGATCCATTCCTTCGACCAATTTTTTGAAC

               *   *                 *                 *   *                 
        502 ATTTCATTCTCGGGAAATCGCATCACTTGGTCTAAAAAGTTTGGCATGTTGTAAAATACTTTTGG
         66 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAAA-ACTTTTGG

                   *                          *               * *  *       * 
        567 TCTTTGATTTAAAAACTTTTTTACGTGAGAATTGGTTCTCTCTTGGTTCTCGAACAAACTTCCAA
        130 TCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA

                            *    
        632 ACTTGTCAAACATTTATGAGT
        195 ACTTGTCAAACATTTACGAGT

                         *    *  *            *                       *      
        653 TCTTTTATAACTTTGGTTTCTAAGAGTATTCAATACGATCCATTCCTTCGACCAATTTCTTGAAC
          1 TCTTTTATAACTTCGGTTCCTGAGAGTATTCAATGCGATCCATTCCTTCGACCAATTTTTTGAAC

                      * *                           *         *        *   * 
        718 ATTCCATGCTTGAGAAATCGCATCATTTGGTCTAAAAAGTGTGTCATTTTATAAACAACATTTAG
         66 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAA-AACTTTTGG

                  *            *                       *          *   * *    
        783 TCTTTGGATTAAAAACTTTATTACGTGAGAATTGTTTCTCTCTCGGTTCTTGGATGAAGTGCCGA
        130 TCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA

                           * *   
        848 ACTTGTCAAACATTTCCTAGT
        195 ACTTGTCAAACATTTACGAGT

                                *  *    *                  *  *              
        869 TCTTTTATAACTTCGGTTCCAGATAGTAGTCGAGAT--GATCCATTCATTTGACCAATTTTTTGA
          1 TCTTTTATAACTTCGGTTCCTGAGAGTATTC-A-ATGCGATCCATTCCTTCGACCAATTTTTTGA

                    *             *                 *                        
        932 ACATTCCACGCTCGGGAAATCGAATCATTTGGTCT-AAAACTTTAGTCATTTTGTAAAAAGCTTT
         64 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTT-GTCATTTTGTAAAAA-CTTT

                             *                       
        996 TGGTCTTTGAATTAAAATCTTTTTTACGTGAGAATTGTTTC
        127 TGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTC


Statistics
Matches: 677,  Mismatches: 124, Indels: 24
        0.82            0.15        0.03

Matches are distributed among these distances:
 212    1  0.00
 213  103  0.15
 214   72  0.11
 215   79  0.12
 216  418  0.62
 217    2  0.00
 218    2  0.00

ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40


Consensus pattern (215 bp):   
TCTTTTATAACTTCGGTTCCTGAGAGTATTCAATGCGATCCATTCCTTCGACCAATTTTTTGAAC
ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAAAACTTTTGGT
CTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA
CTTGTCAAACATTTACGAGT

Done.