genome.fa.s9730.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009730.1 Kokia drynarioides strain JFW-HI SEQ_124449, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79355

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
579--635	19	2.9	19	81	5	69	40	1	3	54	1.28
593--652	28	2.1	29	90	3	95	43	1	1	53	1.20
1268--1316	15	3.3	15	91	0	80	16	10	30	42	1.81
1364--1442	17	4.8	16	82	4	86	51	3	0	44	1.19
1364--1442	34	2.4	33	86	2	113	51	3	0	44	1.19
1364--1431	6	11.8	6	72	20	56	52	2	0	44	1.16
1882--2653	399	1.9	394	83	6	984	22	23	19	35	1.96
1882--2646	198	3.8	197	82	6	852	22	23	19	34	1.96
14456--14540	29	2.8	30	73	18	79	30	7	27	35	1.83
14428--14540	58	1.9	59	80	8	133	33	6	26	33	1.81
14442--14869	59	7.3	57	78	11	338	33	5	28	32	1.81
14516--14877	175	2.1	175	85	3	487	33	6	27	32	1.81
14533--14876	29	11.8	28	75	11	250	34	6	27	31	1.81
15575--15624	19	2.5	20	90	6	75	42	4	2	52	1.31
15596--15649	16	3.6	16	69	19	53	46	1	0	51	1.11
15597--15665	28	2.5	28	85	4	77	49	4	1	44	1.31
15698--15742	3	15.0	3	100	0	90	33	0	0	66	0.92
16297--16367	15	4.7	15	83	0	88	14	12	28	45	1.81
16297--16367	30	2.4	30	87	0	97	14	12	28	45	1.81
16399--16471	17	4.4	17	89	5	105	52	4	0	43	1.20
22984--23010	14	1.9	14	100	0	54	44	18	0	37	1.50
24288--24336	21	2.3	21	86	6	64	12	2	32	53	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25753--25784	10	3.1	10	91	8	55	31	9	0	59	1.29
28600--28661	33	1.9	32	83	9	81	46	29	6	17	1.73
29207--29263	29	2.0	29	89	0	87	15	5	19	59	1.55
30988--31095	7	15.1	7	69	14	51	22	0	27	49	1.56
31027--31095	7	9.0	8	78	12	74	23	0	24	52	1.48
31026--31093	15	4.5	15	75	14	59	23	0	25	51	1.48
31078--31127	25	1.9	26	92	8	84	24	0	36	40	1.55
42977--43050	31	2.4	31	84	6	98	31	17	8	43	1.78
43652--43724	27	2.7	26	73	22	71	57	2	1	38	1.22
43861--43923	33	1.9	33	83	6	83	49	12	7	30	1.69
44339--44378	18	2.4	17	84	12	55	35	0	0	65	0.93
44776--44894	10	12.8	9	66	15	55	65	1	2	30	1.15
44787--44857	29	2.5	28	84	4	81	63	1	0	35	1.03
44843--44894	18	2.9	17	78	13	52	67	1	3	26	1.18
44990--45032	18	2.4	18	92	0	68	27	0	0	72	0.85
44990--45039	18	2.8	17	79	11	55	26	2	0	72	0.96
45244--45268	10	2.5	10	100	0	50	32	0	0	68	0.90
45448--45645	92	2.2	89	79	8	213	32	9	18	39	1.83
50620--50682	21	3.0	21	76	6	56	49	1	4	44	1.33
52477--52523	16	2.9	16	87	0	67	42	8	10	38	1.70
61239--61320	30	2.9	28	75	20	80	37	2	24	35	1.69
61185--61651	58	7.9	57	73	13	201	37	3	23	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61153--61461	29	10.6	28	70	18	115	33	4	26	35	1.77
61245--61516	87	3.1	86	77	13	247	34	4	26	34	1.76
61128--61608	58	8.2	59	71	15	172	35	4	24	35	1.77
61444--61638	30	6.6	29	79	2	183	40	4	20	35	1.73
63134--63219	6	15.0	6	67	22	51	51	2	1	45	1.21
63144--63219	17	4.5	17	85	5	100	51	2	1	44	1.23
63126--63189	23	3.0	22	72	25	66	50	1	0	48	1.10
63574--64340	201	3.8	200	83	5	921	24	22	17	35	1.95
75512--75966	29	15.5	30	73	11	168	33	4	26	35	1.76
75512--75847	59	5.7	58	71	10	202	33	4	27	35	1.77
75857--75971	60	1.9	60	84	5	153	36	3	24	35	1.73
75772--76039	29	9.1	29	74	8	161	33	3	26	37	1.73
75850--76039	30	6.4	29	75	8	134	34	4	24	36	1.75
76950--77030	3	27.3	3	89	2	128	33	0	1	65	1.01
77682--77767	6	15.0	6	69	18	58	51	3	0	45	1.18
77692--77767	17	4.5	17	86	0	107	51	3	0	44	1.20
78754--78837	33	2.6	35	76	14	90	50	2	1	46	1.22

Tables:   1

The End!