Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009738.1 Kokia drynarioides strain JFW-HI SEQ_124457, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2196
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.38


Found at i:145 original size:22 final size:23

Alignment explanation


    Indices: 120--174  Score: 87
    Period size: 23  Copynumber: 2.4  Consensus size: 23

        110 TGCACAAATG

                                    
        120 AACGGAGAGCACA-AACA-TGCTA
          1 AACGGAGAGCACACAA-AGTGCTA

                                   
        142 AACGGAGAGCACACAAAGTGCTA
          1 AACGGAGAGCACACAAAGTGCTA

                      
        165 AACGGAGAGC
          1 AACGGAGAGC

        175 GTGCTAAGAT


Statistics
Matches: 31,  Mismatches: 0, Indels: 3
        0.91            0.00        0.09

Matches are distributed among these distances:
  22   14  0.45
  23   17  0.55

ACGTcount: A:0.44, C:0.22, G:0.27, T:0.07


Consensus pattern (23 bp):   
AACGGAGAGCACACAAAGTGCTA

Done.