Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009743.1 Kokia drynarioides strain JFW-HI SEQ_124462, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4366
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34


Found at i:448 original size:16 final size:16

Alignment explanation


    Indices: 427--462  Score: 56
    Period size: 16  Copynumber: 2.2  Consensus size: 16

        417 TCTCCTATTG

                             
        427 TTTCTTCTTTTTT-TTT
          1 TTTCTT-TTTTTTCTTT

                            
        443 TTTCTTTTTTTTCTTT
          1 TTTCTTTTTTTTCTTT

                
        459 TTTC
          1 TTTC

        463 AAGATGGTGA


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  15    6  0.32
  16   13  0.68

ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86


Consensus pattern (16 bp):   
TTTCTTTTTTTTCTTT

Found at i:449 original size:13 final size:14

Alignment explanation


    Indices: 431--459  Score: 51
    Period size: 13  Copynumber: 2.1  Consensus size: 14

        421 CTATTGTTTC

                          
        431 TTCTTTTTTTT-TT
          1 TTCTTTTTTTTCTT

                          
        444 TTCTTTTTTTTCTT
          1 TTCTTTTTTTTCTT

              
        458 TT
          1 TT

        460 TTCAAGATGG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13   11  0.73
  14    4  0.27

ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90


Consensus pattern (14 bp):   
TTCTTTTTTTTCTT
Done.