genome.fa.s9749.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009749.1 Kokia drynarioides strain JFW-HI SEQ_124468, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183821

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2382--2416	17	1.9	19	88	11	56	74	2	17	5	1.14
4061--4108	18	2.7	18	96	0	87	56	0	4	39	1.19
5924--6132	113	1.9	113	85	6	264	33	11	11	43	1.76
6211--6250	20	2.0	20	95	0	71	30	32	5	32	1.79
9332--9378	20	2.3	20	85	0	67	29	23	10	36	1.89
12140--12212	10	7.4	10	71	20	55	63	0	0	36	0.95
12143--12202	20	3.2	19	78	4	68	61	0	0	38	0.96
12140--12212	29	2.5	29	82	12	87	63	0	0	36	0.95
12172--12225	20	2.9	18	79	12	65	64	0	0	35	0.94
12181--12225	17	2.5	17	89	10	63	64	0	0	35	0.94
12142--12242	47	2.1	47	89	8	161	63	0	0	35	1.01
12331--12383	11	4.6	12	79	6	56	47	0	26	26	1.53
12324--12383	23	2.6	23	78	0	75	48	0	23	28	1.51
12519--12588	30	2.3	30	85	2	86	21	21	25	31	1.98
14651--14685	18	1.9	18	88	0	52	22	28	5	42	1.76
18729--18753	4	6.2	4	100	0	50	76	0	24	0	0.80
23290--23466	45	3.9	45	86	2	257	27	18	25	29	1.98
23451--23483	17	1.9	17	100	0	66	39	6	36	18	1.75
23406--23529	62	2.0	62	98	0	239	29	16	28	25	1.96
23466--23614	45	3.3	45	85	7	212	26	17	27	28	1.98
23361--23573	107	2.0	107	87	3	304	28	16	27	26	1.97
23316--23614	152	2.0	152	87	1	429	27	16	27	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24903--24945	22	2.0	22	95	0	77	41	25	23	9	1.84
24903--24967	22	2.9	22	80	11	62	40	24	26	9	1.85
31290--31328	19	2.1	18	86	13	53	0	12	2	84	0.72
31290--31328	18	2.2	18	86	9	53	0	12	2	84	0.72
31934--31982	22	2.2	22	85	0	62	48	6	12	32	1.65
35716--35826	35	3.2	35	70	7	93	63	2	10	22	1.38
37623--37678	22	2.5	23	85	5	87	42	25	21	10	1.85
39348--39460	17	6.1	18	75	18	90	53	3	0	42	1.18
39363--39441	11	6.8	12	71	9	56	55	3	0	40	1.18
39356--39427	18	3.2	24	70	25	68	52	2	0	44	1.15
39381--39456	17	4.4	17	88	5	109	55	3	0	40	1.18
39356--39441	6	14.5	6	71	10	61	54	3	0	41	1.17
42957--43078	23	5.2	23	77	5	102	45	20	21	13	1.85
50038--50063	5	5.2	5	100	0	52	19	0	42	38	1.51
50349--50448	23	4.3	23	82	7	96	49	20	18	13	1.80
50379--50448	23	3.0	23	91	4	104	45	21	20	12	1.84
50349--50472	23	5.3	23	77	5	88	47	20	19	12	1.82
50969--50998	10	2.8	11	90	10	53	26	0	0	73	0.84
55543--55596	18	3.2	18	72	12	53	35	0	1	62	1.06
58880--58921	16	2.6	16	88	3	57	61	7	0	30	1.22
72284--72313	13	2.3	13	94	0	51	63	0	10	26	1.26
85351--85404	21	2.6	21	93	0	90	48	9	0	42	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86039--86536	61	7.8	63	75	11	347	24	16	10	48	1.78
93224--93265	18	2.3	18	84	8	59	66	0	2	30	1.04
102474--102519	23	2.0	23	82	0	56	34	13	17	34	1.88
107473--107514	21	2.0	21	85	0	57	35	0	0	64	0.94
112331--112372	17	2.5	17	80	7	50	40	0	7	52	1.29
116231--116649	209	2.0	210	93	0	723	42	20	10	26	1.84
120299--120342	22	2.0	21	86	4	61	56	0	0	43	0.99
121411--121446	18	2.0	18	94	0	63	33	8	11	47	1.69
121510--121544	6	5.8	6	89	0	52	77	0	20	2	0.90
121682--121714	3	11.0	3	100	0	66	33	0	0	66	0.92
132090--132215	31	4.0	31	70	13	96	38	5	5	50	1.49
132167--132221	10	5.3	10	75	20	51	43	3	1	50	1.30
134526--134574	16	3.3	15	86	8	57	65	0	0	34	0.93
146064--146122	29	2.0	29	87	6	84	40	6	16	35	1.76
147210--147301	37	2.5	37	96	0	166	20	17	26	35	1.95
148998--149063	30	2.2	29	81	10	71	34	6	3	56	1.40
150556--150644	29	2.8	32	70	26	82	57	2	2	38	1.24
151560--151605	20	2.4	19	82	7	56	52	10	2	34	1.49
154335--154377	21	2.1	21	86	4	61	32	11	0	55	1.36
156739--156799	26	2.3	26	85	5	77	29	1	1	67	1.10
156762--156806	23	2.0	23	82	8	56	33	6	2	57	1.37
157531--157617	23	3.7	23	79	11	88	36	10	12	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157577--157623	23	2.0	23	91	0	76	42	6	14	36	1.72
157619--157684	30	2.2	30	86	0	87	59	12	6	22	1.55
158683--158746	27	2.4	27	71	10	76	26	6	1	65	1.25
160737--160841	40	2.6	40	75	14	108	53	0	1	43	1.18
161454--161487	16	2.0	18	88	11	54	47	0	2	50	1.16
163326--163458	56	2.4	56	79	2	142	25	18	23	33	1.97
164918--165101	51	3.6	51	88	1	278	32	25	11	30	1.92
168174--168355	51	3.6	51	86	3	251	32	23	13	30	1.93
173332--173397	34	1.9	34	90	0	105	34	1	9	54	1.41
173309--173403	17	5.5	17	75	1	82	35	2	7	54	1.40
173371--173412	17	2.4	17	88	4	57	47	0	2	50	1.14
174149--174219	32	2.2	33	84	2	90	50	2	4	42	1.36
174176--174220	15	2.9	15	86	6	63	48	4	2	44	1.35
175301--175629	30	11.2	29	72	9	236	34	29	3	32	1.74
175291--175663	59	6.3	59	84	4	432	34	29	3	32	1.74

Tables:   1

The End!