genome.fa.s9756.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009756.1 Kokia drynarioides strain JFW-HI SEQ_124475, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94719

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2540--2996	102	4.5	102	87	2	596	29	24	15	29	1.96
2592--2831	33	7.0	35	70	16	130	30	24	15	29	1.96
2663--3098	69	6.4	68	74	11	333	29	25	16	28	1.97
2794--3142	171	2.0	171	89	1	529	29	24	16	28	1.97
2540--3098	204	2.7	202	83	6	567	29	24	16	29	1.96
4928--4960	7	4.7	7	88	11	50	54	12	0	33	1.37
6399--6429	2	15.5	2	100	0	62	51	0	0	48	1.00
6857--6939	40	2.1	40	90	0	130	20	22	7	49	1.73
9088--9141	15	3.6	15	75	9	56	22	24	25	27	2.00
10292--10338	21	2.2	21	80	0	58	10	34	4	51	1.56
10435--10496	20	3.2	19	82	13	72	6	20	3	69	1.25
10434--10499	21	3.3	20	74	19	66	6	21	3	69	1.24
11783--11835	26	2.0	26	96	0	97	35	20	18	24	1.95
20262--20304	9	4.6	9	78	21	52	0	25	0	74	0.82
20267--20305	20	1.9	19	90	10	60	0	28	0	71	0.86
21558--21608	9	5.7	9	76	17	52	0	31	0	68	0.90
36180--36230	26	1.9	27	81	18	63	52	5	3	37	1.44
36628--36686	25	2.3	27	85	5	77	67	15	1	15	1.31
39144--39179	6	6.0	6	93	0	63	19	0	80	0	0.71
39143--39178	18	2.0	18	100	0	72	22	0	77	0	0.76
39448--39506	29	2.0	30	83	9	77	35	5	6	52	1.50
45724--45827	44	2.4	43	80	6	102	17	11	16	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45752--45833	44	1.9	42	87	5	119	17	10	17	54	1.70
46006--46043	19	2.1	18	85	9	51	34	0	13	52	1.40
47636--48032	60	6.7	60	80	10	388	30	17	14	37	1.89
47632--48032	119	3.4	117	79	13	401	30	17	14	37	1.90
47632--48107	59	8.0	59	79	10	404	30	17	14	37	1.90
47637--48086	119	3.8	120	77	13	290	31	17	14	36	1.90
52085--52395	84	3.7	86	91	1	477	42	5	5	46	1.51
52701--52815	30	3.9	30	84	1	151	26	6	4	62	1.39
53638--54030	120	3.3	120	85	5	494	38	13	18	29	1.89
53638--54031	60	6.6	60	81	5	431	38	13	18	28	1.89
54168--54201	16	2.0	18	88	11	54	55	11	8	23	1.63
54685--54765	27	3.0	28	70	24	73	62	3	7	25	1.38
54767--54844	32	2.4	32	95	0	138	58	24	8	7	1.54
55335--55378	23	1.9	23	90	0	70	50	0	6	43	1.29
57007--57040	15	2.3	15	90	10	52	82	2	0	14	0.79
57805--57850	19	2.5	19	96	3	85	50	4	10	34	1.57
57929--57962	14	2.4	14	86	13	52	79	0	5	14	0.91
61149--61182	9	3.7	9	88	4	50	55	0	0	44	0.99
61151--61183	12	2.6	13	85	9	50	54	0	0	45	0.99
61924--61953	5	6.0	5	92	0	51	20	56	20	3	1.56
62335--62652	29	10.9	29	68	15	183	34	25	2	38	1.68
62340--62654	59	5.4	58	82	8	272	33	25	2	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62340--62714	58	6.4	59	80	10	314	33	24	2	39	1.70
62512--62735	117	1.9	117	81	8	269	33	22	4	39	1.73
62635--62738	28	3.6	28	74	16	106	33	21	5	39	1.77
74492--74765	49	5.6	50	77	10	278	35	18	27	18	1.94
74491--74775	98	2.9	98	87	3	412	35	18	27	18	1.95
74755--74799	22	2.0	22	95	0	81	28	37	24	8	1.86
75305--75366	17	3.6	17	73	4	61	33	3	9	53	1.50
76103--76137	12	2.8	12	86	4	52	54	0	0	45	0.99
76103--76145	15	2.8	16	82	10	54	53	0	0	46	1.00
77216--77388	29	5.9	29	75	7	136	35	26	1	36	1.67
77236--77535	29	10.2	30	71	11	181	33	26	3	37	1.72
77238--77539	59	5.1	59	85	4	335	33	26	2	36	1.72
77238--77539	117	2.6	116	81	7	312	33	26	2	36	1.72
78812--78992	37	4.9	37	83	0	209	33	32	21	12	1.90
78870--78932	21	3.2	20	69	28	55	31	34	23	9	1.87
80110--80138	3	9.7	3	100	0	58	68	0	0	31	0.89
84397--84444	20	2.4	20	82	6	53	18	20	18	41	1.90
86852--86893	22	1.9	22	90	0	66	64	26	2	7	1.32
90696--90801	40	2.7	40	92	0	176	36	16	23	22	1.94
90859--91071	41	5.2	41	82	2	257	24	23	25	25	2.00
90818--91072	123	2.1	123	80	4	291	24	23	25	26	2.00
91684--92074	169	2.3	169	89	1	586	29	14	22	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92122--92161	17	2.3	17	91	4	62	67	5	2	25	1.23
92134--92225	15	6.3	14	70	20	55	63	1	2	33	1.14
92131--92229	12	7.5	13	69	19	53	62	1	2	34	1.13
92260--92322	6	10.8	6	78	13	69	58	0	1	39	1.07
92267--92344	17	4.9	16	75	18	65	55	1	1	42	1.16
92259--92322	23	2.8	23	79	9	85	57	0	1	40	1.08
92260--92369	29	3.9	29	74	18	83	58	1	0	39	1.15

Tables:   1

The End!