genome.fa.s9758.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009758.1 Kokia drynarioides strain JFW-HI SEQ_124477, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108173

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1620--1726	57	1.9	56	92	1	178	51	5	13	29	1.63
6334--6372	14	2.6	16	84	12	55	35	2	12	48	1.55
7305--7330	12	2.2	12	100	0	52	30	15	11	42	1.82
8158--8205	14	3.4	14	78	16	62	47	33	0	18	1.49
8906--9087	96	1.9	96	81	8	219	35	13	20	29	1.92
9396--9722	29	11.2	29	76	14	264	29	3	29	36	1.75
9419--9722	58	5.2	58	81	9	307	29	3	29	37	1.74
10631--10697	3	22.0	3	74	8	55	40	2	0	56	1.14
10632--10700	12	6.2	12	74	16	67	42	2	0	55	1.15
10630--10712	43	1.9	42	83	11	105	40	6	0	53	1.26
11399--11508	17	6.4	17	83	7	132	52	3	1	41	1.29
11399--11508	52	2.1	52	86	3	150	52	3	1	41	1.29
11410--11508	35	2.9	34	87	6	128	55	4	2	38	1.30
11906--12492	208	2.9	208	90	2	888	20	23	20	35	1.95
31653--31688	18	2.1	16	90	10	54	30	16	0	52	1.44
34392--34417	7	3.7	7	100	0	52	0	0	42	57	0.98
35650--35674	13	1.9	13	100	0	50	24	32	0	44	1.54
35877--35946	15	4.7	15	69	0	50	68	0	4	27	1.08
35877--35946	30	2.3	30	82	4	88	68	0	4	27	1.08
35919--35949	15	2.1	15	93	0	53	64	0	3	32	1.09
38381--38585	43	4.7	43	81	2	214	31	16	24	27	1.96
45799--45833	16	2.1	17	89	5	54	20	11	2	65	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49006--49047	13	3.4	12	81	15	50	9	9	2	78	1.05
59056--59089	5	6.4	5	90	10	50	61	0	2	35	1.11
59592--59634	21	2.0	21	86	0	59	69	2	2	25	1.12
61053--61279	76	3.0	76	100	0	454	35	20	14	29	1.92
62147--62180	10	3.4	10	87	0	50	26	0	0	73	0.83
62444--62539	11	7.2	14	77	13	64	47	0	0	52	1.00
62441--62548	27	4.1	27	81	18	138	50	0	0	49	1.00
62472--62546	11	6.3	11	81	15	87	49	0	0	50	1.00
62430--62545	50	2.3	50	91	7	184	50	0	0	49	1.00
63239--63305	20	3.3	20	75	22	61	47	0	0	52	1.00
65133--65171	17	2.3	17	86	8	53	38	0	5	56	1.22
65146--65218	11	6.8	11	77	16	64	42	0	2	54	1.14
65139--65200	23	2.7	23	85	9	81	41	0	3	54	1.16
65146--65220	6	12.8	6	79	10	84	44	0	2	53	1.14
65146--65219	23	3.5	22	76	17	75	43	0	2	54	1.14
65837--65930	30	3.1	30	87	0	134	20	27	42	9	1.83
66522--66900	30	12.9	29	77	8	288	34	26	3	36	1.73
66522--66984	88	5.2	86	78	11	388	33	26	3	35	1.73
66522--66900	118	3.2	116	82	7	419	34	26	3	36	1.73
66756--66951	59	3.3	59	76	8	161	33	27	3	35	1.74
66902--66977	29	2.6	29	76	14	75	35	26	1	36	1.65
68720--68829	24	4.6	24	85	5	143	27	22	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68720--68826	48	2.2	48	90	3	162	27	23	21	28	1.99
70785--70820	4	9.0	4	100	0	72	25	25	0	50	1.50
71551--71587	12	3.1	12	88	11	58	40	2	0	56	1.13
71528--71604	29	2.7	30	80	6	79	45	3	0	50	1.20
71565--71604	18	2.3	18	86	4	55	45	2	0	52	1.14
72320--72357	20	1.9	19	89	5	58	42	0	0	57	0.98
73439--73627	29	6.5	28	80	10	102	33	32	4	28	1.78
73460--73809	59	6.0	58	86	5	467	30	32	7	29	1.84
73460--73863	88	4.6	88	87	5	541	31	31	6	29	1.83
73460--73809	29	12.0	29	84	7	467	30	32	7	29	1.84
73460--73863	59	6.9	58	84	7	439	31	31	6	29	1.83
74993--75020	3	9.3	3	100	0	56	64	0	0	35	0.94
76459--76512	15	3.4	15	71	14	54	57	7	0	35	1.27
76451--76519	33	2.1	34	97	2	131	53	5	0	40	1.25
77252--77311	31	1.9	31	93	6	104	35	15	8	41	1.77
80022--80068	13	3.7	12	79	20	51	59	0	0	40	0.97
90235--90346	56	2.0	56	96	0	206	31	14	16	37	1.89
92443--92574	29	4.5	29	74	11	99	40	2	25	32	1.68
92468--92810	29	11.7	29	67	19	92	37	2	25	33	1.71
92443--92633	59	3.2	59	84	8	228	40	3	23	32	1.70
92526--92909	29	13.1	30	67	18	161	39	3	23	32	1.73
92527--92837	88	3.5	87	88	4	403	38	3	24	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92436--92886	59	7.7	60	71	14	218	39	3	24	32	1.72
92795--92908	59	2.0	57	84	6	149	42	5	19	32	1.73
94686--94791	6	18.2	6	68	16	71	50	0	1	46	1.18
94689--94783	29	3.3	28	73	12	93	51	1	2	45	1.20
94686--94802	17	6.4	17	74	18	101	52	1	1	44	1.21
94704--94791	41	2.1	41	85	4	115	51	1	2	45	1.21
96887--96933	23	2.0	23	87	0	67	34	23	2	40	1.67
97885--97946	29	2.2	28	82	2	70	46	1	17	33	1.58
98830--98863	16	2.1	17	88	5	52	32	8	11	47	1.71
107030--107072	10	4.3	10	80	11	52	55	2	0	41	1.12
107300--107345	19	2.4	19	100	0	92	28	54	4	13	1.57
107747--107812	3	21.0	3	72	9	51	63	3	1	31	1.19
107745--107806	22	2.8	21	80	9	61	61	3	1	33	1.22
107754--107813	29	2.1	29	83	0	75	65	3	1	30	1.19

Tables:   1

The End!