Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009759.1 Kokia drynarioides strain JFW-HI SEQ_124478, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 528391
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Warning! 144 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:1453 original size:16 final size:15
Alignment explanation
Indices: 1420--1473 Score: 51
Period size: 15 Copynumber: 3.6 Consensus size: 15
1410 ATTCAAATTA
1420 TTATCATTAAATTATT
1 TTAT-ATTAAATTATT
1436 TTATATTAATATT-TT
1 TTATATTAA-ATTATT
*
1451 TT-TGATCAAA-TATT
1 TTAT-ATTAAATTATT
1465 TTATATTAA
1 TTATATTAA
1474 TATTTATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
13 1 0.03
14 10 0.31
15 14 0.44
16 7 0.22
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (15 bp):
TTATATTAAATTATT
Found at i:1481 original size:12 final size:13
Alignment explanation
Indices: 1432--1482 Score: 50
Period size: 12 Copynumber: 3.8 Consensus size: 13
1422 ATCATTAAAT
1432 TATTTTATATTAA
1 TATTTTATATTAA
* *
1445 TATTTTTTTGATCAAA
1 TA-TTTTAT-AT-TAA
1461 TATTTTATATTAA
1 TATTTTATATTAA
1474 TA-TTTATAT
1 TATTTTATAT
1483 AACAATAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
12 7 0.23
13 6 0.19
14 7 0.23
15 7 0.23
16 4 0.13
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (13 bp):
TATTTTATATTAA
Found at i:3818 original size:20 final size:20
Alignment explanation
Indices: 3781--3821 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
3771 ATAAAGATAA
* * *
3781 TATCAAATTATTCTATTTAC
1 TATCAAATAAATCAATTTAC
3801 TATCAAATAAATCAATTTAC
1 TATCAAATAAATCAATTTAC
3821 T
1 T
3822 CATTATACTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (20 bp):
TATCAAATAAATCAATTTAC
Found at i:3830 original size:29 final size:31
Alignment explanation
Indices: 3767--3849 Score: 77
Period size: 29 Copynumber: 2.8 Consensus size: 31
3757 TAAGACCCTC
*
3767 TACTATAAAGATAATATCAAATTATTCTATT
1 TACTATAAAGATAATATCAAATTACTCTATT
* *
3798 TACTATCAA-ATAA-ATCAATTTACTC-ATT
1 TACTATAAAGATAATATCAAATTACTCTATT
*
3826 ATACTATTAAAAATAAT-T-AAATTA
1 -TACTA-TAAAGATAATATCAAATTA
3850 AATTAAAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
28 3 0.07
29 15 0.35
30 12 0.28
31 13 0.30
ACGTcount: A:0.48, C:0.11, G:0.01, T:0.40
Consensus pattern (31 bp):
TACTATAAAGATAATATCAAATTACTCTATT
Found at i:4231 original size:5 final size:5
Alignment explanation
Indices: 4221--4247 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
4211 TTTAGTGCCC
4221 TTAAT TTAAT TTAAT TTAAT TTAAT TT
1 TTAAT TTAAT TTAAT TTAAT TTAAT TT
4248 TTTTCCTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (5 bp):
TTAAT
Found at i:6729 original size:14 final size:15
Alignment explanation
Indices: 6676--6730 Score: 62
Period size: 14 Copynumber: 3.8 Consensus size: 15
6666 TAAATAAATA
*
6676 AATAATTTAATTATC
1 AATATTTTAATTATC
*
6691 -ATATTTTATATTAAC
1 AATATTTTA-ATTATC
6706 AATA-TTTAATT-TC
1 AATATTTTAATTATC
6719 AATATTTTAATT
1 AATATTTTAATT
6731 CATATAATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
13 5 0.15
14 17 0.50
15 9 0.26
16 3 0.09
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (15 bp):
AATATTTTAATTATC
Found at i:21128 original size:59 final size:59
Alignment explanation
Indices: 21031--21195 Score: 208
Period size: 59 Copynumber: 2.8 Consensus size: 59
21021 AACATTTGAT
* **
21031 ACTTGAACTTGACATTTTTTCCTAATTTGGTATATAAACTTTTTTTTA-CTCAAATTGGG
1 ACTTGAACTTGACCTTTTTTCCTAATTTGGTACCTAAACTTTTTTTTACCT-AAATTGGG
* ** * *
21090 ACTTGAACTTGACCTTTTTTCCTAATTTGGTACCTAAACTTTCTTGAACCTAATTTGGT
1 ACTTGAACTTGACCTTTTTTCCTAATTTGGTACCTAAACTTTTTTTTACCTAAATTGGG
* * *
21149 ACTTGAACTTGA-CATTTTTCCTAATTTTGTACCTAAGCTTTTTTTTA
1 ACTTGAACTTGACCTTTTTTCCTAATTTGGTACCTAAACTTTTTTTTA
21196 GATTCAATTT
Statistics
Matches: 91, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
58 29 0.32
59 60 0.66
60 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.11, T:0.47
Consensus pattern (59 bp):
ACTTGAACTTGACCTTTTTTCCTAATTTGGTACCTAAACTTTTTTTTACCTAAATTGGG
Found at i:21472 original size:27 final size:28
Alignment explanation
Indices: 21417--21491 Score: 71
Period size: 28 Copynumber: 2.6 Consensus size: 28
21407 GTTGGATCCC
* *
21417 AAAAAGTTTAAGTACCAAATTGGACAAA
1 AAAAAATTTAAGTACCAAATTGAACAAA
* *
21445 AAAAAATTTAAGTATCAAATT-AAGAAA
1 AAAAAATTTAAGTACCAAATTGAACAAA
*
21472 AATGTCAAATTTAAGTACCA
1 AA---AAAATTTAAGTACCA
21492 TATGTTATGT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
27 6 0.16
28 19 0.50
30 13 0.34
ACGTcount: A:0.55, C:0.09, G:0.11, T:0.25
Consensus pattern (28 bp):
AAAAAATTTAAGTACCAAATTGAACAAA
Found at i:25277 original size:18 final size:18
Alignment explanation
Indices: 25256--25291 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
25246 TAAATAAATT
25256 ATTT-AAAAATTCATAAAA
1 ATTTAAAAAATT-ATAAAA
25274 ATTTAAAAAATTATAAAA
1 ATTTAAAAAATTATAAAA
25292 CTCGATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (18 bp):
ATTTAAAAAATTATAAAA
Found at i:28841 original size:7 final size:7
Alignment explanation
Indices: 28831--28870 Score: 62
Period size: 7 Copynumber: 5.6 Consensus size: 7
28821 AAAATTTTTA
28831 AAAAAAT
1 AAAAAAT
28838 AAAAAAT
1 AAAAAAT
28845 AAAAAAT
1 AAAAAAT
28852 AAAAAAT
1 AAAAAAT
*
28859 ATATAAAT
1 A-AAAAAT
28867 AAAA
1 AAAA
28871 TTTTGTCAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
7 24 0.80
8 6 0.20
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.17
Consensus pattern (7 bp):
AAAAAAT
Found at i:31077 original size:37 final size:39
Alignment explanation
Indices: 31026--31113 Score: 94
Period size: 37 Copynumber: 2.4 Consensus size: 39
31016 AAGTTATTTT
* * * *
31026 TTAAA-ATTATTTTTAAATTGAATATTGAAGT-T-ATAC
1 TTAAATATTAATTTTAAATTAAAAATTGAAGTATCATAA
* *
31062 TTAAATATTAATTTTAAGTTAAAAATTGAATTATCATAA
1 TTAAATATTAATTTTAAATTAAAAATTGAAGTATCATAA
31101 TT-AATATTAATTT
1 TTAAATATTAATTT
31114 CAAGTATTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
36 5 0.12
37 21 0.49
38 12 0.28
39 5 0.12
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (39 bp):
TTAAATATTAATTTTAAATTAAAAATTGAAGTATCATAA
Found at i:31227 original size:15 final size:14
Alignment explanation
Indices: 31195--31248 Score: 54
Period size: 16 Copynumber: 3.6 Consensus size: 14
31185 TAATACTTTT
*
31195 ATTTTAATTTGATCA
1 ATTTTAATTTTAT-A
31210 ATTTTAATTTTTATA
1 ATTTTAA-TTTTATA
*
31225 ATTTTCGAATTTTAAA
1 ATTTT--AATTTTATA
31241 ATTTTAAT
1 ATTTTAAT
31249 CTAACCCAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
14 3 0.09
15 13 0.38
16 16 0.47
17 2 0.06
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (14 bp):
ATTTTAATTTTATA
Found at i:33341 original size:18 final size:18
Alignment explanation
Indices: 33309--33348 Score: 55
Period size: 20 Copynumber: 2.2 Consensus size: 18
33299 GCTTGAGTTT
33309 AAATCAAAATCTTTCAATAA
1 AAATCAAAA-CTTTCAA-AA
33329 AAATCAAAA-TTTCAAAA
1 AAATCAAAACTTTCAAAA
33346 AAA
1 AAA
33349 AACTTGATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 6 0.30
20 9 0.45
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.25
Consensus pattern (18 bp):
AAATCAAAACTTTCAAAA
Found at i:33349 original size:18 final size:19
Alignment explanation
Indices: 33309--33349 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
33299 GCTTGAGTTT
*
33309 AAATCAAAATCTTTCAATAA
1 AAATCAAAA-CTTTCAAAAA
33329 AAATCAAAA-TTTCAAAAA
1 AAATCAAAACTTTCAAAAA
33347 AAA
1 AAA
33350 ACTTGATCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 11 0.55
20 9 0.45
ACGTcount: A:0.63, C:0.12, G:0.00, T:0.24
Consensus pattern (19 bp):
AAATCAAAACTTTCAAAAA
Found at i:38150 original size:196 final size:192
Alignment explanation
Indices: 37714--38182 Score: 530
Period size: 196 Copynumber: 2.4 Consensus size: 192
37704 AAACTCGTGC
* * * * *
37714 CCAATTACAAGAAAACCGAATTCTGCATTTACCAATTCATTATCCAACTAAAACTATAAACTTTT
1 CCAATAACTAGAAAACCAAATTCTGCATTTACTAATTCATTATCCAACTAAAAAT-TAAAC-TTT
* *
37779 CAAAGTATAAAGTCATAAACAGTTAAAAAAAAACAATGTAATTAATTGATTATTTTCCTGCAGTT
64 CAAAATATAAAGTCATAAACAGTT----AAAAACAATGTAATTAATTGATTATTTTCCTGCAATT
* * * * *
37844 TCTTTTCTCAGTAACCAAGCACAAATTGAATCAAACAAATTTAAGAACAAGAAACCATCCTTTCC
125 TCTGTTCTCAGTAACCAAACACAAATAGAATCAAACAAATTTAAGAACAAAAAACCATCCTTACC
*
37909 GCA
190 ACA
* * * * * *
37912 CCAATTACTAGAAAACCAAATTATGCATTTACTACTTCATTATCCAACCAAAAATTGAAAGTCTC
1 CCAATAACTAGAAAACCAAATTCTGCATTTACTAATTCATTATCCAACTAAAAATT-AAACTTTC
*
37977 AAAATATAAAGTCATAAATCAGTT-AAAACTAATGTAATTAATTGATTAATTTTCCTGGAATTTC
65 AAAATATAAAGTCATAAA-CAGTTAAAAAC-AATGTAATTAATTGATT-ATTTTCCTGCAATTTC
* * * * *
38041 TGTTCTCAGTGACCAAACACATATAGAATCTAACAAATTTGAGAA-ATAAAAAGCCATTCTTACC
127 TGTTCTCAGTAACCAAACACAAATAGAATCAAACAAATTTAAGAACA-AAAAA-CCATCCTTACC
38105 AC-
190 ACA
* * * *
38107 CTCAATAACTAGTAAACCAAATTCTGCATTTAGTATTTCATTATCCAACTAAAATTTTAAACTTT
1 C-CAATAACTAGAAAACCAAATTCTGCATTTACTAATTCATTATCCAACTAAAA-ATTAAACTTT
38172 CAAAATATAAA
64 CAAAATATAAA
38183 ACAAATAAAA
Statistics
Matches: 231, Mismatches: 32, Indels: 18
0.82 0.11 0.06
Matches are distributed among these distances:
193 5 0.02
194 18 0.08
195 57 0.25
196 72 0.31
197 23 0.10
198 56 0.24
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.31
Consensus pattern (192 bp):
CCAATAACTAGAAAACCAAATTCTGCATTTACTAATTCATTATCCAACTAAAAATTAAACTTTCA
AAATATAAAGTCATAAACAGTTAAAAACAATGTAATTAATTGATTATTTTCCTGCAATTTCTGTT
CTCAGTAACCAAACACAAATAGAATCAAACAAATTTAAGAACAAAAAACCATCCTTACCACA
Found at i:48360 original size:13 final size:13
Alignment explanation
Indices: 48331--48364 Score: 54
Period size: 11 Copynumber: 2.8 Consensus size: 13
48321 GGGTTTTTTC
48331 AAAAAAATATGAT
1 AAAAAAATATGAT
48344 --AAAAATATGAT
1 AAAAAAATATGAT
48355 AAAAAAATAT
1 AAAAAAATAT
48365 TTGACACCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 11 0.58
13 8 0.42
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.24
Consensus pattern (13 bp):
AAAAAAATATGAT
Found at i:48755 original size:16 final size:16
Alignment explanation
Indices: 48710--48759 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
48700 TAAACTTAGC
*
48710 TAATTAATTACCAAAA
1 TAATTAATTATCAAAA
*
48726 T-A-TAA-TATAAAAAA
1 TAATTAATTAT-CAAAA
48740 TAATTAATTATCAAAA
1 TAATTAATTATCAAAA
48756 TAAT
1 TAAT
48760 ATTCCATCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 8
0.71 0.08 0.21
Matches are distributed among these distances:
13 2 0.07
14 8 0.30
15 2 0.07
16 12 0.44
17 3 0.11
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (16 bp):
TAATTAATTATCAAAA
Found at i:48786 original size:58 final size:59
Alignment explanation
Indices: 48719--48834 Score: 216
Period size: 58 Copynumber: 2.0 Consensus size: 59
48709 CTAATTAATT
48719 ACCAAAATATAATATAAAAAATAATTAATTATCAAAATAATATT-CCATCATATTATTG
1 ACCAAAATATAATATAAAAAATAATTAATTATCAAAATAATATTCCCATCATATTATTG
*
48777 ACCAAAATATAATATAAAAAATAATTAATTATGAAAATAATATTCCCATCATATTATT
1 ACCAAAATATAATATAAAAAATAATTAATTATCAAAATAATATTCCCATCATATTATT
48835 TTATCTTATC
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
58 43 0.77
59 13 0.23
ACGTcount: A:0.53, C:0.10, G:0.02, T:0.34
Consensus pattern (59 bp):
ACCAAAATATAATATAAAAAATAATTAATTATCAAAATAATATTCCCATCATATTATTG
Found at i:48815 original size:30 final size:30
Alignment explanation
Indices: 48710--48807 Score: 105
Period size: 30 Copynumber: 3.3 Consensus size: 30
48700 TAAACTTAGC
48710 TAATTAATTACCAAAATATAATATAAAAAA
1 TAATTAATTACCAAAATATAATATAAAAAA
* ** **
48740 TAATTAATTATC-AAA-ATAATATTCCATCA
1 TAATTAATTACCAAAATATAATA-TAAAAAA
48769 T-ATT-ATTGACCAAAATATAATATAAAAAA
1 TAATTAATT-ACCAAAATATAATATAAAAAA
48798 TAATTAATTA
1 TAATTAATTA
48808 TGAAAATAAT
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
27 3 0.06
28 11 0.21
29 14 0.27
30 21 0.40
31 3 0.06
ACGTcount: A:0.56, C:0.08, G:0.01, T:0.35
Consensus pattern (30 bp):
TAATTAATTACCAAAATATAATATAAAAAA
Found at i:58251 original size:31 final size:31
Alignment explanation
Indices: 58211--58278 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
58201 AGTTTATTCT
* *
58211 TGAACTTGGCAATTGTTCCCATATTGGGGCC
1 TGAACTTGGCAATTATTCCCACATTGGGGCC
* **
58242 TGAATTTGGCAATTATTTTCACATTGGGGCC
1 TGAACTTGGCAATTATTCCCACATTGGGGCC
58273 TGAACT
1 TGAACT
58279 CTAGGGTTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (31 bp):
TGAACTTGGCAATTATTCCCACATTGGGGCC
Found at i:62552 original size:24 final size:23
Alignment explanation
Indices: 62525--62571 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 23
62515 TTTAAAAGGG
*
62525 TAAAAATATAATTTTACTATTTTA
1 TAAAAATATAATATTAC-ATTTTA
62549 TAAAAATATAATATTACATTTTA
1 TAAAAATATAATATTACATTTTA
62572 GGACCAAGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (23 bp):
TAAAAATATAATATTACATTTTA
Found at i:64614 original size:157 final size:158
Alignment explanation
Indices: 64327--64644 Score: 430
Period size: 157 Copynumber: 2.0 Consensus size: 158
64317 CAAAAGTGAG
* * * *
64327 GAAAATTATCATGGGGGTGTGATAGGTTAGGTCACTTGTTGTAATTGTTGAAGAGAGTGTATATT
1 GAAAATTATCATCGGGGTGTAATAGGTTAGGTCACTTGTTGTAATTGTTGAAGAGAGTGGATATC
* * * *
64392 TCTCACTGAGCAAGACTCCAAAGACTTAGGGAAACCAAATTGCATAAACAATTCCTTGTGTTCTG
66 TCTCACTGAACAAGACTCCAAAGACTTAGAGAAACCAAATCGCATAAACAACTCCTTGTGTTCTG
*
64457 TTTTGTTTACTGTTTTCATTTTAGTGGT
131 TTTTGTTTACTATTTTCATTTTAGTGGT
64485 GAAAATTATCA-CGGGGTGTAATAGGTTAGGATCACTTGTTGTAATTGTTGAA-AGAGTGGATAT
1 GAAAATTATCATCGGGGTGTAATAGGTTAGG-TCACTTGTTGTAATTGTTGAAGAGAGTGGATAT
* * * * *
64548 CTCTCATTGAACAATG-CT-C-TAGACATATAGATAAACCAAATCGCGTCAACAACTCCTTGTGT
65 CTCTCACTGAACAA-GACTCCAAAGAC-T-TAGAGAAACCAAATCGCATAAACAACTCCTTGTGT
*
64610 TCTGTTTTGTTTACTATTTTTATTTTAGTGGT
127 TCTGTTTTGTTTACTATTTTCATTTTAGTGGT
64642 GAA
1 GAA
64645 GGAATGTCCA
Statistics
Matches: 141, Mismatches: 15, Indels: 9
0.85 0.09 0.05
Matches are distributed among these distances:
155 4 0.03
156 2 0.01
157 102 0.72
158 33 0.23
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.37
Consensus pattern (158 bp):
GAAAATTATCATCGGGGTGTAATAGGTTAGGTCACTTGTTGTAATTGTTGAAGAGAGTGGATATC
TCTCACTGAACAAGACTCCAAAGACTTAGAGAAACCAAATCGCATAAACAACTCCTTGTGTTCTG
TTTTGTTTACTATTTTCATTTTAGTGGT
Found at i:67591 original size:20 final size:18
Alignment explanation
Indices: 67541--67637 Score: 59
Period size: 17 Copynumber: 5.7 Consensus size: 18
67531 CTACAAGATA
67541 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
*
67558 AGTATT-AATATAATCACTTT
1 AATATTAAAT-TAAT-A-TTT
*
67578 AATATTAAATTAATA--A
1 AATATTAAATTAATATTT
*
67594 AATATT--ATTAA-A-AT
1 AATATTAAATTAATATTT
*
67608 AAGTATTAAACTAA-ATTT
1 AA-TATTAAATTAATATTT
67626 AATATTAAATTA
1 AATATTAAATTA
67638 TTAAAATAAT
Statistics
Matches: 63, Mismatches: 7, Indels: 20
0.70 0.08 0.22
Matches are distributed among these distances:
13 1 0.02
14 7 0.11
15 4 0.06
16 9 0.14
17 22 0.35
18 3 0.05
19 2 0.03
20 12 0.19
21 3 0.05
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:69552 original size:16 final size:16
Alignment explanation
Indices: 69531--69561 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69521 AGTATTAAAG
69531 CATATAAATTTGAAAT
1 CATATAAATTTGAAAT
*
69547 CATATATATTTGAAA
1 CATATAAATTTGAAA
69562 ACTCTTTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (16 bp):
CATATAAATTTGAAAT
Found at i:70330 original size:54 final size:53
Alignment explanation
Indices: 70272--70443 Score: 127
Period size: 54 Copynumber: 3.2 Consensus size: 53
70262 TCGGCCAGCT
70272 ATTGCACCTATGACATAATTTTACTATTGCGTAATTTCGGGTCA-AGGGCCAACA
1 ATTGCACCTATGACAT-ATTTTACTATTGCGTAATTTCGGGTCACA-GGCCAACA
* * * ** * * * *
70326 ATTGCATCC-ACAGA-ATCATTCTATTATTGCCCAATTTCGAGCCATAGGCTAACA
1 ATTGCA-CCTA-TGACAT-ATTTTACTATTGCGTAATTTCGGGTCACAGGCCAACA
* * ** *
70380 ATTGCACTTAT-AGCACTACTTTACTATTGCGTAATTTTAGGTCACAGGCCAACG
1 ATTGCACCTATGA-CA-TATTTTACTATTGCGTAATTTCGGGTCACAGGCCAACA
70434 ATTGCACCTA
1 ATTGCACCTA
70444 CGGCATGATT
Statistics
Matches: 87, Mismatches: 24, Indels: 14
0.70 0.19 0.11
Matches are distributed among these distances:
52 1 0.01
53 1 0.01
54 79 0.91
55 6 0.07
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (53 bp):
ATTGCACCTATGACATATTTTACTATTGCGTAATTTCGGGTCACAGGCCAACA
Found at i:70492 original size:108 final size:108
Alignment explanation
Indices: 70291--70485 Score: 234
Period size: 108 Copynumber: 1.8 Consensus size: 108
70281 ATGACATAAT
* * *
70291 TTTACTATTGCGTAATTTCGGGTCAAGGGCCAACAATTGCATCCACAGAATCATTCTATTATTGC
1 TTTACTATTGCGTAATTTCAGGTCAAGGGCCAACAATTGCATCCACAGAATCATTCTACTACTGC
** * *
70356 CCAATTTCGAGCCATAGGCTAACAATTGCACTTATAGCACTAC
66 AAAATTTCGAGCCATAAGCCAACAATTGCACTTATAGCACTAC
* * * * *
70399 TTTACTATTGCGTAATTTTAGGTCACA-GGCCAACGATTGCA-CCTACGGCATGATTCTACTACT
1 TTTACTATTGCGTAATTTCAGGTCA-AGGGCCAACAATTGCATCC-ACAGAATCATTCTACTACT
70462 GCAAAATTTCG-GCCATCAAGCCAA
64 GCAAAATTTCGAGCCAT-AAGCCAA
70486 TGATTGCGCC
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
107 7 0.10
108 64 0.89
109 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (108 bp):
TTTACTATTGCGTAATTTCAGGTCAAGGGCCAACAATTGCATCCACAGAATCATTCTACTACTGC
AAAATTTCGAGCCATAAGCCAACAATTGCACTTATAGCACTAC
Found at i:72031 original size:3 final size:3
Alignment explanation
Indices: 72023--72047 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
72013 AAGTGAAAGC
72023 ACA ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA A
72048 AGACAGTAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:74069 original size:21 final size:20
Alignment explanation
Indices: 74029--74072 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
74019 TATTATTAAC
*
74029 AAAAAATAAAAAAGCAAAAG
1 AAAAAATAAAAAAGAAAAAG
74049 AAAAAATAAAATAA-AATAAAG
1 AAAAAATAAAA-AAGAA-AAAG
74070 AAA
1 AAA
74073 CATCTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.82, C:0.02, G:0.07, T:0.09
Consensus pattern (20 bp):
AAAAAATAAAAAAGAAAAAG
Found at i:76545 original size:20 final size:21
Alignment explanation
Indices: 76483--76545 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 21
76473 TTATTTATTC
* **
76483 AAATTAAATTTTATGTAAA-A
1 AAATTAAATTATATCAAAATA
* * *
76503 AAATTAAATTGTCTCAAACTA
1 AAATTAAATTATATCAAAATA
76524 AAATTAAA-TATATCAAAATA
1 AAATTAAATTATATCAAAATA
76544 AA
1 AA
76546 TTTTAATAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
20 25 0.74
21 9 0.26
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.33
Consensus pattern (21 bp):
AAATTAAATTATATCAAAATA
Found at i:76653 original size:2 final size:2
Alignment explanation
Indices: 76646--76690 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
76636 AATTTATCAG
76646 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76688 AT A
1 AT A
76691 ATGAAATTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:89949 original size:18 final size:19
Alignment explanation
Indices: 89926--89966 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
89916 TCATTTTAAA
89926 TTAATTT-ATAAAAATATT
1 TTAATTTAATAAAAATATT
* *
89944 TTAATTTAATAATATTATT
1 TTAATTTAATAAAAATATT
89963 TTAA
1 TTAA
89967 ATTTTTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TTAATTTAATAAAAATATT
Found at i:90009 original size:2 final size:2
Alignment explanation
Indices: 90002--90028 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
89992 AAACAATTTA
90002 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
90029 AACATTTGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:91481 original size:240 final size:242
Alignment explanation
Indices: 91006--91482 Score: 578
Period size: 240 Copynumber: 2.0 Consensus size: 242
90996 GTCATTTGAA
*
91006 ATTTTCTCTGATTTTTCTTATCTCTTGTTTGTTTTCTCGGAATTTCTGCATTTTCTCGTCTGGGT
1 ATTTTCTCTGATTTTTCTTATCTCTTGTTTGTTTCCTCGGAATTTCTGCATTTTCTCGTCTGGGT
* * *
91071 CATCTCCAATTTTTTATAACTTTTATGTTTTGTTTTTCATTCATAATGAGTTCTCTTCAACTCCT
66 CATCTCCAATATTTGATAACTTTTA-GATTTGTTTTTCATTCATAATGAGTTCTCTTCAACTCCT
** * *
91136 TTGTTTTTTTTAATCATTAATTTCGATATGTTGTTTAAGATGATTGATTTTCTAATTAAATTGGC
130 TTGTTTTTTTTAATCATTAATTTCGATATGTTGTTTAAGATGACCGAATTTCTAATTAAATTAGC
* **
91201 TACATTGCATTCGATAATTTATTCTGATTTATTTGTTTATGATTACTG
195 TACATTGCATTCGATAATTTACTCTGATTTATAAGTTTATGATTACTG
* *
91249 ATTTTCTCTG-TTTTTCTTATTTCTTGTTTGTTTCCTCGGAATTTCTGCCTTTTCTCGT-TGGGT
1 ATTTTCTCTGATTTTTCTTATCTCTTGTTTGTTTCCTCGGAATTTCTGCATTTTCTCGTCTGGGT
***
91312 CATCTCCAATATTTGATATA-TTTTA-ATTT-TTTTTCATTGGC-T-AT-A-TTCTGC-TCCTTT
66 CATCTCCAATATTTGATA-ACTTTTAGATTTGTTTTTCATT--CATAATGAGTTCT-CTTCAACT
** * * *
91369 GTTTTTTTTTTTTCTAAAATCATTAATTTGGATATGTTGTTTAAGATTACCGAAATTTCTAATTA
127 CCTTTGTTTTTTT-T--AATCATTAATTTCGATATGTTGTTTAAGATGACCG-AATTTCTAATTA
* * * *
91434 AATTAGCTATATTGCATTTGATAATTTGCTGTGATTTATAAGTTTATGA
188 AATTAGCTACATTGCATTCGATAATTTACTCTGATTTATAAGTTTATGA
91483 ATGGATTGCT
Statistics
Matches: 201, Mismatches: 25, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
236 17 0.08
237 3 0.01
238 11 0.05
239 35 0.17
240 53 0.26
241 26 0.13
242 46 0.23
243 10 0.05
ACGTcount: A:0.21, C:0.13, G:0.12, T:0.54
Consensus pattern (242 bp):
ATTTTCTCTGATTTTTCTTATCTCTTGTTTGTTTCCTCGGAATTTCTGCATTTTCTCGTCTGGGT
CATCTCCAATATTTGATAACTTTTAGATTTGTTTTTCATTCATAATGAGTTCTCTTCAACTCCTT
TGTTTTTTTTAATCATTAATTTCGATATGTTGTTTAAGATGACCGAATTTCTAATTAAATTAGCT
ACATTGCATTCGATAATTTACTCTGATTTATAAGTTTATGATTACTG
Found at i:95279 original size:21 final size:21
Alignment explanation
Indices: 95253--95294 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
95243 TTGATATGAA
95253 TTAATTGAATTAATTAAAAAT
1 TTAATTGAATTAATTAAAAAT
* * *
95274 TTAATTTAATTGATTAGAAAT
1 TTAATTGAATTAATTAAAAAT
95295 AGGTGAAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (21 bp):
TTAATTGAATTAATTAAAAAT
Found at i:97659 original size:104 final size:104
Alignment explanation
Indices: 97344--98322 Score: 579
Period size: 104 Copynumber: 9.3 Consensus size: 104
97334 TGATGATTTC
* * * * * * * *
97344 GTTTGATTCGTGAAAGCTGAATAATGTATAAACGAATTATTAAATTTTGGCATGTCAAAATTCAT
1 GTTTGATTCGTAAAACCTGAATCATGGATACACAAATCATTAAATTTTGGCATGTCGAAATTCAT
* *
97409 AGTATTGGTATAGTAGTTGGTGATTTCATTTGAACTATA
66 AGCATTGGTATAGTAGTTGATGATTTCATTTGAACTATA
* * * ** ****** ** * ** *
97448 GTTTGGTTCGGAAATCCTCCATCATGGATATTTTGCTCGGTAACTTTTCCTCCTAT-TAATGCAA
1 GTTTGATTCGTAAAACCTGAATCATGGATACACAAATCATTAAATTTT--GGC-ATGT--CG-AA
* * * * ** * * *
97512 ATTACA-A-TATTGGTTTAGTAGTAGATGATGTGGTTTCATCTGTA
60 ATT-CATAGCATTGGTATAGTAGTTGATGATTTCATTTGAACTATA
* * * *
97556 GTTTCATTCATAAAACCTGAATCATGGATACACGAATCATTAAATTTTGGCATGTCGGAATTCAT
1 GTTTGATTCGTAAAACCTGAATCATGGATACACAAATCATTAAATTTTGGCATGTCGAAATTCAT
* * *
97621 AGAATTGGTATAGTAGTTAATGATTTCATTTGAACTGTA
66 AGCATTGGTATAGTAGTTGATGATTTCATTTGAACTATA
* ****** ** * **
97660 GTTTGGTTCGTAAAACCTCG-ATCATGGATATTTTTCTCGGTAACTTTTCCTCCTAT-TAACGCA
1 GTTTGATTCGTAAAACCT-GAATCATGGATACACAAATCATTAAATTTT--GGC-ATGT--CG-A
* * * * * *
97723 CATT-ACAGTATTGGTTTAATAGTTGATGATTTCGTTTGAACTATA
59 AATTCATAGCATTGGTATAGTAGTTGATGATTTCATTTGAACTATA
* *
97768 GTTTGATTTGTAAAACCT-AACTCATGGATACACAAATCATTAAATTTTGGCATGTTGAAATTCA
1 GTTTGATTCGTAAAACCTGAA-TCATGGATACACAAATCATTAAATTTTGGCATGTCGAAATTCA
* *
97832 TAGCATTGATATAGTAGTCGATGATTTCATTTGAACTATA
65 TAGCATTGGTATAGTAGTTGATGATTTCATTTGAACTATA
* * ****** * **
97872 GTTTG-GTCTGTAAAACCTGAATCATCGATATTTTTCTC-TGTAACTTTTCCTCCTAT-TAACGC
1 GTTTGATTC-GTAAAACCTGAATCATGGATACACAAATCAT-TAAATTTT--GGC-ATGT--CG-
* * * * * *
97934 ACATT-ACAGTATTGGTTTAATAGTTGATGATTTCGTTTGAACTATA
58 AAATTCATAGCATTGGTATAGTAGTTGATGATTTCATTTGAACTATA
*
97980 GTTTGATTTGTAAAACCT-AACTCATGGATACACAAATCATTAAATTTTGGCATGTCGAAATTCA
1 GTTTGATTCGTAAAACCTGAA-TCATGGATACACAAATCATTAAATTTTGGCATGTCGAAATTCA
98044 TAGCATTGGTATAGTAGTTGATGATTTCATTTGAACTATA
65 TAGCATTGGTATAGTAGTTGATGATTTCATTTGAACTATA
* * * **** * * **
98084 GTTTGGTTTGTAAAACCTGAATCATCGA-A-ATTTTTCTCTGTAACTTTTCCTCCTAT-TAACGC
1 GTTTGATTCGTAAAACCTGAATCATGGATACACAAATC-AT-TAAATTTT--GGC-ATGT--CG-
* * * * * * **
98146 ACATT-ACAGTATTGGTTTAATATTTGATGATTTTGTTTGAACTATA
58 AAATTCATAGCATTGGTATAGTAGTTGATGATTTCATTTGAACTATA
*
98192 GTTTGATTTGTAAAACCT-AACTCATGGATACACAAATCATTAAATTTTGGCATGTCGAAATTCA
1 GTTTGATTCGTAAAACCTGAA-TCATGGATACACAAATCATTAAATTTTGGCATGTCGAAATTCA
*
98256 TAGCATTGGTATAGTAGTCGATGATTTCATTTGAACTATA
65 TAGCATTGGTATAGTAGTTGATGATTTCATTTGAACTATA
* * *
98296 GTTTGGTTCTTTAAACCTGAATCATGG
1 GTTTGATTCGTAAAACCTGAATCATGG
98323 TTATTTTGCT
Statistics
Matches: 639, Mismatches: 186, Indels: 100
0.69 0.20 0.11
Matches are distributed among these distances:
102 5 0.01
103 21 0.03
104 281 0.44
105 15 0.02
106 16 0.03
107 13 0.02
108 262 0.41
109 21 0.03
110 5 0.01
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.40
Consensus pattern (104 bp):
GTTTGATTCGTAAAACCTGAATCATGGATACACAAATCATTAAATTTTGGCATGTCGAAATTCAT
AGCATTGGTATAGTAGTTGATGATTTCATTTGAACTATA
Found at i:97784 original size:212 final size:212
Alignment explanation
Indices: 97382--98432 Score: 1529
Period size: 212 Copynumber: 5.0 Consensus size: 212
97372 TAAACGAATT
* * *
97382 ATTAAATTTTGGCATGTCAAAATTCATAGTATTGGTATAGTAGTTGGTGATTTCATTTGAACTAT
1 ATTAAATTTTGGCATGTCGAAATTCATAGCATTGGTATAGTAGTTGATGATTTCATTTGAACTAT
* * ** * * *
97447 AGTTTGGTTCGGAAATCCTCCATCATGGATATTTTGCTCGGTAACTTTTCCTCCTATTAATGCAA
66 AGTTTGGTTCGTAAAACCTGAATCATGGATATTTTTCTCGGTAACTTTTCCTCCTATTAACGCAC
* * * * * * * * * *
97512 ATTACAATATTGGTTTAGTAGTAGATGATGTGGTTTCATCTGTAGTTTCATTCATAAAACCTGAA
131 ATTACAGTATTGGTTTAATAGTTGATGATTTCGTTTGAACTATAGTTTGATTCGTAAAACCT-AA
*
97577 -TCATGGATACACGAATC
195 CTCATGGATACACAAATC
* * * *
97594 ATTAAATTTTGGCATGTCGGAATTCATAGAATTGGTATAGTAGTTAATGATTTCATTTGAACTGT
1 ATTAAATTTTGGCATGTCGAAATTCATAGCATTGGTATAGTAGTTGATGATTTCATTTGAACTAT
97659 AGTTTGGTTCGTAAAACCTCG-ATCATGGATATTTTTCTCGGTAACTTTTCCTCCTATTAACGCA
66 AGTTTGGTTCGTAAAACCT-GAATCATGGATATTTTTCTCGGTAACTTTTCCTCCTATTAACGCA
*
97723 CATTACAGTATTGGTTTAATAGTTGATGATTTCGTTTGAACTATAGTTTGATTTGTAAAACCTAA
130 CATTACAGTATTGGTTTAATAGTTGATGATTTCGTTTGAACTATAGTTTGATTCGTAAAACCTAA
97788 CTCATGGATACACAAATC
195 CTCATGGATACACAAATC
* * *
97806 ATTAAATTTTGGCATGTTGAAATTCATAGCATTGATATAGTAGTCGATGATTTCATTTGAACTAT
1 ATTAAATTTTGGCATGTCGAAATTCATAGCATTGGTATAGTAGTTGATGATTTCATTTGAACTAT
* *
97871 AGTTTGG-TCTGTAAAACCTGAATCATCGATATTTTTCTCTGTAACTTTTCCTCCTATTAACGCA
66 AGTTTGGTTC-GTAAAACCTGAATCATGGATATTTTTCTCGGTAACTTTTCCTCCTATTAACGCA
*
97935 CATTACAGTATTGGTTTAATAGTTGATGATTTCGTTTGAACTATAGTTTGATTTGTAAAACCTAA
130 CATTACAGTATTGGTTTAATAGTTGATGATTTCGTTTGAACTATAGTTTGATTCGTAAAACCTAA
98000 CTCATGGATACACAAATC
195 CTCATGGATACACAAATC
98018 ATTAAATTTTGGCATGTCGAAATTCATAGCATTGGTATAGTAGTTGATGATTTCATTTGAACTAT
1 ATTAAATTTTGGCATGTCGAAATTCATAGCATTGGTATAGTAGTTGATGATTTCATTTGAACTAT
* * * *
98083 AGTTTGGTTTGTAAAACCTGAATCATCGAAATTTTTCTCTGTAACTTTTCCTCCTATTAACGCAC
66 AGTTTGGTTCGTAAAACCTGAATCATGGATATTTTTCTCGGTAACTTTTCCTCCTATTAACGCAC
* * *
98148 ATTACAGTATTGGTTTAATATTTGATGATTTTGTTTGAACTATAGTTTGATTTGTAAAACCTAAC
131 ATTACAGTATTGGTTTAATAGTTGATGATTTCGTTTGAACTATAGTTTGATTCGTAAAACCTAAC
98213 TCATGGATACACAAATC
196 TCATGGATACACAAATC
*
98230 ATTAAATTTTGGCATGTCGAAATTCATAGCATTGGTATAGTAGTCGATGATTTCATTTGAACTAT
1 ATTAAATTTTGGCATGTCGAAATTCATAGCATTGGTATAGTAGTTGATGATTTCATTTGAACTAT
* * * * * * * *
98295 AGTTTGGTTCTTTAAACCTGAATCATGGTTATTTTGCTTGGTAACTTTTCCTCGTATTAACTCAA
66 AGTTTGGTTCGTAAAACCTGAATCATGGATATTTTTCTCGGTAACTTTTCCTCCTATTAACGCAC
* * * * * *
98360 ATTACAGTATAGGTATAGTAATTGATGATTTCATTT-AACTATAGTTT-AGTTCATAAAACCTGA
131 ATTACAGTATTGGTTTAATAGTTGATGATTTCGTTTGAACTATAGTTTGA-TTCGTAAAACCT-A
98423 A-TCATGGATA
194 ACTCATGGATA
98433 GTTACTCATT
Statistics
Matches: 771, Mismatches: 61, Indels: 15
0.91 0.07 0.02
Matches are distributed among these distances:
210 1 0.00
211 35 0.05
212 734 0.95
213 1 0.00
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (212 bp):
ATTAAATTTTGGCATGTCGAAATTCATAGCATTGGTATAGTAGTTGATGATTTCATTTGAACTAT
AGTTTGGTTCGTAAAACCTGAATCATGGATATTTTTCTCGGTAACTTTTCCTCCTATTAACGCAC
ATTACAGTATTGGTTTAATAGTTGATGATTTCGTTTGAACTATAGTTTGATTCGTAAAACCTAAC
TCATGGATACACAAATC
Found at i:98496 original size:107 final size:107
Alignment explanation
Indices: 97409--98475 Score: 381
Period size: 108 Copynumber: 10.0 Consensus size: 107
97399 CAAAATTCAT
* * * * ** * **
97409 AGTATTGGTATAGTAGTTGGTGATTTCATTTGAACTATAGTTTGGTTCGGAAATCCTCCATCATG
1 AGTATAGGTATAGTAATT-ATGATTTCATTTGAACTATAGTTTAGTTCATAAAACCTGAATCATG
* * * * *
97474 GATATTTTGCTCGGTAACTTTTCCTCCTATTAATGCAAATTAC
65 GATATGTTACTCAGTAACATTTCCTCCTATTAACGCAAATTAC
* * * * * * ** * * *
97517 AATATTGGTTTAGTAGTAGATGATGTGGTTTCATCTGTAGTTTCA-TTCATAAAACCTGAATCAT
1 AGTATAGGTATAGTAAT-TATGATTTCATTTGAACTATAGTTT-AGTTCATAAAACCTGAATCAT
**** * * * * *
97581 GGATACACGAATCATTAA-ATTT--TGGC-ATGT--CG-GAATTCAT
64 GGATATGTTACTCAGTAACATTTCCT-CCTAT-TAACGCAAATT-AC
* * * * * *
97621 AGAATTGGTATAGTAGTTAATGATTTCATTTGAACTGTAGTTTGGTTCGTAAAACCTCG-ATCAT
1 AGTATAGGTATAGTAATT-ATGATTTCATTTGAACTATAGTTTAGTTCATAAAACCT-GAATCAT
* * * * *
97685 GGATATTTTTCTCGGTAACTTTTCCTCCTATTAACGCACATTAC
64 GGATATGTTACTCAGTAACATTTCCTCCTATTAACGCAAATTAC
* * * * * **
97729 AGTATTGGTTTAATAGTTGATGATTTCGTTTGAACTATAGTTT-GATTTGTAAAACCT-AACTCA
1 AGTATAGGTATAGTAATT-ATGATTTCATTTGAACTATAGTTTAG-TTCATAAAACCTGAA-TCA
**** * * *** * * *
97792 TGGATACACAAATCATTAA-ATTTTGGCATGTT---G-AAATTCAT
63 TGGATATGTTACTCAGTAACATTTCCTCCTATTAACGCAAATT-AC
* * * * * * *
97833 AGCATTGATATAGTAGTCGATGATTTCATTTGAACTATAGTTT-GGTCTGTAAAACCTGAATCAT
1 AGTATAGGTATAGTAAT-TATGATTTCATTTGAACTATAGTTTAGTTC-ATAAAACCTGAATCAT
* * * * * *
97897 CGATATTTTTCTCTGTAACTTTTCCTCCTATTAACGCACATTAC
64 GGATATGTTACTCAGTAACATTTCCTCCTATTAACGCAAATTAC
* * * * * **
97941 AGTATTGGTTTAATAGTTGATGATTTCGTTTGAACTATAGTTT-GATTTGTAAAACCT-AACTCA
1 AGTATAGGTATAGTAATT-ATGATTTCATTTGAACTATAGTTTAG-TTCATAAAACCTGAA-TCA
**** * * * *
98004 TGGATACACAAATCATTAA-ATTT--TGGC-ATGT--CG-AAATTCAT
63 TGGATATGTTACTCAGTAACATTTCCT-CCTAT-TAACGCAAATT-AC
* * * * ** *
98045 AGCATTGGTATAGTAGTTGATGATTTCATTTGAACTATAGTTTGGTTTGTAAAACCTGAATCATC
1 AGTATAGGTATAGTAATT-ATGATTTCATTTGAACTATAGTTTAGTTCATAAAACCTGAATCATG
* * * * * *
98110 GAAATTTTTCTCTGTAACTTTTCCTCCTATTAACGCACATTAC
65 GATATGTTACTCAGTAACATTTCCTCCTATTAACGCAAATTAC
* * * * ** **
98153 AGTATTGGTTTAATATTTGATGATTTTGTTTGAACTATAGTTT-GATTTGTAAAACCT-AACTCA
1 AGTATAGGTATAGTAATT-ATGATTTCATTTGAACTATAGTTTAG-TTCATAAAACCTGAA-TCA
**** * * * *
98216 TGGATACACAAATCATTAA-ATTT--TGGC-ATGT--CG-AAATTCAT
63 TGGATATGTTACTCAGTAACATTTCCT-CCTAT-TAACGCAAATT-AC
* * * * * * *
98257 AGCATTGGTATAGTAGTCGATGATTTCATTTGAACTATAGTTTGGTTCTTTAAACCTGAATCATG
1 AGTATAGGTATAGTAAT-TATGATTTCATTTGAACTATAGTTTAGTTCATAAAACCTGAATCATG
* * * ** * * *
98322 GTTATTTTGCTTGGTAACTTTTCCTCGTATTAACTCAAATTAC
65 GATATGTTACTCAGTAACATTTCCTCCTATTAACGCAAATTAC
98365 AGTATAGGTATAGTAATTGATGATTTCATTT-AACTATAGTTTAGTTCATAAAACCTGAATCATG
1 AGTATAGGTATAGTAATT-ATGATTTCATTTGAACTATAGTTTAGTTCATAAAACCTGAATCATG
*
98429 GATA-GTTACTCATTAACATTTCCTCCTATTAACGCAAATTAC
65 GATATGTTACTCAGTAACATTTCCTCCTATTAACGCAAATTAC
98471 AGTAT
1 AGTAT
98476 TGGTTGAACT
Statistics
Matches: 700, Mismatches: 201, Indels: 118
0.69 0.20 0.12
Matches are distributed among these distances:
103 17 0.02
104 247 0.35
105 34 0.05
106 46 0.07
107 65 0.09
108 274 0.39
109 17 0.02
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (107 bp):
AGTATAGGTATAGTAATTATGATTTCATTTGAACTATAGTTTAGTTCATAAAACCTGAATCATGG
ATATGTTACTCAGTAACATTTCCTCCTATTAACGCAAATTAC
Found at i:100367 original size:30 final size:31
Alignment explanation
Indices: 100306--100367 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 31
100296 GTAGTCAAAC
**
100306 ATGATCAAAACCTTTTGAAAGTGCTTGAATA
1 ATGATCAAAACCTTTTGAAAGTGCTCAAATA
100337 ATGATC-AAACCTTTTCG-AAGTGCTCAAATA
1 ATGATCAAAACCTTTT-GAAAGTGCTCAAATA
100367 A
1 A
100368 GGGCTTCTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 21 0.75
31 7 0.25
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.31
Consensus pattern (31 bp):
ATGATCAAAACCTTTTGAAAGTGCTCAAATA
Found at i:101480 original size:4 final size:4
Alignment explanation
Indices: 101473--101497 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
101463 CTACGCATGC
101473 ATGT ATGT ATGT ATGT ATGT ATGT A
1 ATGT ATGT ATGT ATGT ATGT ATGT A
101498 ACACCATCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (4 bp):
ATGT
Found at i:106449 original size:39 final size:37
Alignment explanation
Indices: 106387--106459 Score: 119
Period size: 39 Copynumber: 1.9 Consensus size: 37
106377 ATTTTAAAAT
*
106387 TGTTTTTAATACAACAAATATTTATTATATTTATTTG
1 TGTTTTTAATACAAAAAATATTTATTATATTTATTTG
106424 TGTTTTTAAATACAATAAAATATTTATTATATTTAT
1 TGTTTTT-AATACAA-AAAATATTTATTATATTTAT
106460 AATAGTGTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
37 7 0.21
38 7 0.21
39 19 0.58
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.53
Consensus pattern (37 bp):
TGTTTTTAATACAAAAAATATTTATTATATTTATTTG
Found at i:117130 original size:3 final size:3
Alignment explanation
Indices: 117122--117146 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
117112 TTTCATGTTA
117122 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
117147 CACTGGTGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:120459 original size:11 final size:11
Alignment explanation
Indices: 120445--120492 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
120435 ATATCCAAAT
*
120445 AATAAAAACAA
1 AATAATAACAA
120456 AATAATAACAA
1 AATAATAACAA
* **
120467 TATAATAGTAA
1 AATAATAACAA
*
120478 AATAACAACAA
1 AATAATAACAA
120489 AATA
1 AATA
120493 GTGGCAAAAT
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.71, C:0.08, G:0.02, T:0.19
Consensus pattern (11 bp):
AATAATAACAA
Found at i:120501 original size:22 final size:22
Alignment explanation
Indices: 120453--120518 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
120443 ATAATAAAAA
* * * *
120453 CAAAATAATAACAATATAATAG
1 CAAAATAACAACAAAATAGTGG
*
120475 TAAAATAACAACAAAATAGTGG
1 CAAAATAACAACAAAATAGTGG
* *
120497 CAAAATAACACCAAAACAGTGG
1 CAAAATAACAACAAAATAGTGG
120519 AAACACCAAC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.59, C:0.14, G:0.11, T:0.17
Consensus pattern (22 bp):
CAAAATAACAACAAAATAGTGG
Found at i:121916 original size:16 final size:16
Alignment explanation
Indices: 121895--121925 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
121885 ATATTTATAA
121895 AATTTTCAAAATTTAT
1 AATTTTCAAAATTTAT
*
121911 AATTTTTAAAATTTA
1 AATTTTCAAAATTTA
121926 AAAAAAAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (16 bp):
AATTTTCAAAATTTAT
Found at i:133665 original size:22 final size:23
Alignment explanation
Indices: 133624--133669 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 23
133614 AAGTTCGCTC
133624 ATATTATTATTTTTTAAATATTT
1 ATATTATTATTTTTTAAATATTT
133647 ATATTA-TATTATTTT-AATATTT
1 ATATTATTATT-TTTTAAATATTT
133669 A
1 A
133670 ATAATTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (23 bp):
ATATTATTATTTTTTAAATATTT
Found at i:135128 original size:4 final size:4
Alignment explanation
Indices: 135119--135163 Score: 63
Period size: 4 Copynumber: 11.2 Consensus size: 4
135109 ATTCGTTACT
* * *
135119 TGTA TGTA TGTA TATA TGTA TGGA TGGA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
135164 TGCTTTGAGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.47
Consensus pattern (4 bp):
TGTA
Found at i:145727 original size:22 final size:23
Alignment explanation
Indices: 145694--145739 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
145684 ATATGTGGAT
145694 ATTTTTTATGTTATTCAAATTTG
1 ATTTTTTATGTTATTCAAATTTG
* *
145717 ATTTTTT-TGTTATTTAGATTTG
1 ATTTTTTATGTTATTCAAATTTG
145739 A
1 A
145740 GTGCGAGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.24, C:0.02, G:0.11, T:0.63
Consensus pattern (23 bp):
ATTTTTTATGTTATTCAAATTTG
Found at i:156754 original size:2 final size:2
Alignment explanation
Indices: 156747--156771 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
156737 AAAAGAGGGT
156747 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
156772 AGCTCGAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:160398 original size:17 final size:16
Alignment explanation
Indices: 160376--160428 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 16
160366 TATATATTCG
160376 AATATGAATTTTATAAA
1 AATATGAATTTT-TAAA
*
160393 AATATGATTTTTTAAA
1 AATATGAATTTTTAAA
*
160409 TATATAGAATTATTTAAA
1 AATAT-GAATT-TTTAAA
160427 AA
1 AA
160429 AAAGGAGTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
16 8 0.27
17 15 0.50
18 7 0.23
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (16 bp):
AATATGAATTTTTAAA
Found at i:164352 original size:29 final size:31
Alignment explanation
Indices: 164317--164383 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 31
164307 CTTCAAATTT
* *
164317 GAATTTAGTCTTTATACTTTT-A-TTTTTAA
1 GAATTTAGTCTCTATACTTTTCAGGTTTTAA
* *
164346 GAATTTATTCTCTCTACTTTTCAGGTTTTAA
1 GAATTTAGTCTCTATACTTTTCAGGTTTTAA
164377 -AATTTAG
1 GAATTTAG
164384 ATCAAGTTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
29 18 0.58
30 7 0.23
31 6 0.19
ACGTcount: A:0.27, C:0.10, G:0.09, T:0.54
Consensus pattern (31 bp):
GAATTTAGTCTCTATACTTTTCAGGTTTTAA
Found at i:164565 original size:20 final size:20
Alignment explanation
Indices: 164536--164573 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
164526 GACCTAGATT
164536 CTAAAATTTTAAAAATAGGA
1 CTAAAATTTTAAAAATAGGA
* *
164556 CTAAATTTTTTAAAATAG
1 CTAAAATTTTAAAAATAG
164574 AAGTATAGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.05, G:0.08, T:0.37
Consensus pattern (20 bp):
CTAAAATTTTAAAAATAGGA
Found at i:165592 original size:4 final size:4
Alignment explanation
Indices: 165583--165618 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
165573 GCAGGGGAGA
* *
165583 GTAT GTAT GTAT GTAT GTAT GTAT GCAT GCAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
165619 CAGTGCAGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.25, C:0.06, G:0.25, T:0.44
Consensus pattern (4 bp):
GTAT
Found at i:171259 original size:16 final size:16
Alignment explanation
Indices: 171218--171259 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
171208 TGAATTTTTT
171218 TCGAATTAAA-TCAAG
1 TCGAATTAAATTCAAG
** *
171233 TAAAATAAAATTCAAG
1 TCGAATTAAATTCAAG
171249 TCGAATTAAAT
1 TCGAATTAAAT
171260 CAAATGAAAT
Statistics
Matches: 20, Mismatches: 6, Indels: 1
0.74 0.22 0.04
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.52, C:0.10, G:0.10, T:0.29
Consensus pattern (16 bp):
TCGAATTAAATTCAAG
Found at i:171511 original size:10 final size:10
Alignment explanation
Indices: 171488--171607 Score: 66
Period size: 11 Copynumber: 11.5 Consensus size: 10
171478 AATTTTAGCT
171488 TTTTTTATATA
1 TTTTTTATA-A
*
171499 TTTTTTAGAA
1 TTTTTTATAA
*
171509 TTTTTTTAAAAA
1 -TTTTTT-ATAA
*
171521 TTTATTATAA
1 TTTTTTATAA
171531 TTTTTTAATATAA
1 -TTTTT--TATAA
*
171544 TTTTTTTTAA
1 TTTTTTATAA
*
171554 --TTTTAAAA
1 TTTTTTATAA
*
171562 TTTATTATGAA
1 TTTTTTAT-AA
*
171573 TTTTTGA-AA
1 TTTTTTATAA
* *
171582 TTTATTATGAT
1 TTTTTTAT-AA
171593 TTTTTTATAA
1 TTTTTTATAA
171603 TTTTT
1 TTTTT
171608 ATTAAGAGAG
Statistics
Matches: 82, Mismatches: 17, Indels: 21
0.68 0.14 0.17
Matches are distributed among these distances:
8 6 0.07
9 7 0.09
10 18 0.22
11 38 0.46
12 8 0.10
13 5 0.06
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:171609 original size:20 final size:21
Alignment explanation
Indices: 171487--171609 Score: 80
Period size: 20 Copynumber: 5.9 Consensus size: 21
171477 AAATTTTAGC
*
171487 TTTTTTTATATATTTTTTA-GAA
1 TTTTTTTATA-ATTTATTATG-A
* *
171509 TTTTTTTAAAAATTTATTATAA
1 TTTTTTT-ATAATTTATTATGA
171531 TTTTTTAATATAATTT-TT-T--
1 TTTTTT--TATAATTTATTATGA
* *
171550 TTAATTTTAAAATTTATTATGA
1 TT-TTTTTATAATTTATTATGA
* *
171572 ATTTTTGA-AATTTATTATGA
1 TTTTTTTATAATTTATTATGA
171592 TTTTTTTATAATTT-TTAT
1 TTTTTTTATAATTTATTAT
171610 TAAGAGAGAT
Statistics
Matches: 80, Mismatches: 11, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
18 7 0.09
19 4 0.05
20 26 0.32
21 10 0.12
22 24 0.30
23 8 0.10
24 1 0.01
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (21 bp):
TTTTTTTATAATTTATTATGA
Found at i:185097 original size:94 final size:93
Alignment explanation
Indices: 184988--185163 Score: 298
Period size: 94 Copynumber: 1.9 Consensus size: 93
184978 TTAAGCAAGT
** *
184988 TAAATTTGTACTGGAGGTCTTGCTGTTAGCTAAAGTTGGCATTATTGATGATTGCTGATGTTTCT
1 TAAATTTGTACTGGAGACCTTGCTGTTAGCTAAAGTTGGAATTATTGATGATTGCTGATGTTTCT
185053 TTTAATTCCAAAAGATAACCATTACCTAG
66 TTTAA-TCCAAAAGATAACCATTACCTAG
*
185082 TAAATTTGTACTGGAGACCTTGCTGTTAGCTAAAGTTGGAATTATTGATGATTGCTGATGTTTTT
1 TAAATTTGTACTGGAGACCTTGCTGTTAGCTAAAGTTGGAATTATTGATGATTGCTGATGTTTCT
*
185147 TTTTATCCAAAAGATAA
66 TTTAATCCAAAAGATAA
185164 ACGTTATGTA
Statistics
Matches: 77, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
93 12 0.16
94 65 0.84
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.40
Consensus pattern (93 bp):
TAAATTTGTACTGGAGACCTTGCTGTTAGCTAAAGTTGGAATTATTGATGATTGCTGATGTTTCT
TTTAATCCAAAAGATAACCATTACCTAG
Found at i:187378 original size:21 final size:21
Alignment explanation
Indices: 187354--187393 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
187344 TCCTCAAATG
187354 CAGCAGACA-CAGCAACAACTA
1 CAGCAG-CAGCAGCAACAACTA
*
187375 CAGCAGCAGCTGCAACAAC
1 CAGCAGCAGCAGCAACAAC
187394 AACCTCAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.42, C:0.35, G:0.17, T:0.05
Consensus pattern (21 bp):
CAGCAGCAGCAGCAACAACTA
Found at i:195581 original size:30 final size:30
Alignment explanation
Indices: 195511--195583 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 30
195501 AATAGAATTC
* * *
195511 AATAGTTGAACGATTATTTTTTAACTTTTT
1 AATAGTTAAATGATTATTTTGTAACTTTTT
* * *
195541 -CTAATTAAATGATTATTTTGTAATTTTTT
1 AATAGTTAAATGATTATTTTGTAACTTTTT
195570 AATAGTTAAATGAT
1 AATAGTTAAATGAT
195584 AAAAAAGAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
29 23 0.68
30 11 0.32
ACGTcount: A:0.34, C:0.04, G:0.10, T:0.52
Consensus pattern (30 bp):
AATAGTTAAATGATTATTTTGTAACTTTTT
Found at i:201382 original size:49 final size:49
Alignment explanation
Indices: 201327--201421 Score: 136
Period size: 49 Copynumber: 1.9 Consensus size: 49
201317 CAAAACGTAC
** * * * *
201327 GTAGAATCAAATTATTATAGCACAAATATACTAAGAATTGAAACAAAGT
1 GTAGAATCAAACAATTACAACACAAATAGACTAAGAACTGAAACAAAGT
201376 GTAGAATCAAACAATTACAACACAAATAGACTAAGAACTGAAACAA
1 GTAGAATCAAACAATTACAACACAAATAGACTAAGAACTGAAACAA
201422 TTAAATTAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 40 1.00
ACGTcount: A:0.54, C:0.14, G:0.12, T:0.21
Consensus pattern (49 bp):
GTAGAATCAAACAATTACAACACAAATAGACTAAGAACTGAAACAAAGT
Found at i:215460 original size:18 final size:17
Alignment explanation
Indices: 215428--215462 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
215418 ATAATTAGAA
*
215428 TATTTAATTTTAAATAT
1 TATTTAATTTAAAATAT
215445 TATTTGAATTTAAAATAT
1 TATTT-AATTTAAAATAT
215463 CCGAATCTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (17 bp):
TATTTAATTTAAAATAT
Found at i:219202 original size:171 final size:171
Alignment explanation
Indices: 218948--219486 Score: 822
Period size: 170 Copynumber: 3.2 Consensus size: 171
218938 CTTTTACCAT
* * * *
218948 TAAATTAAAACAACCCCAAAAGCTTACATTGCACCATTCTATTTGTTCCAACCATTATTCTAAAC
1 TAAATTAAAACAACCCCAAAAGCTTACATTGTAGCATTCTATTTGTTCCAACCATTATTTTAATC
**
219013 ATTCATTCTTCAAATACCCATTTCATTGCCTCAAATTTTAT-CCCAATTTTGCATAAAAATTTCA
66 ATTCATTCTTCAAATACCCATTTCAAGGCCTCAAATTTTATCCCCAATTTTGCATAAAAATTTCA
*
219077 ATTTTTTTTCAAGTATAAAACACATGAAACATGAAATATAGC
131 ATTTTTTTT-AAGGATAAAACACATGAAACATGAAATATAGC
*
219119 TAAATTAAAACAACCCCAAAAGCTTACGTTGTAGCATTCTATTTGTTCCAACCATTATTTTAATC
1 TAAATTAAAACAACCCCAAAAGCTTACATTGTAGCATTCTATTTGTTCCAACCATTATTTTAATC
*
219184 ATTCATTCTTCAAATACCCATTTCAAGGCCTCAAAATTTATCCCCAATTTTGCATAAAAATTTCA
66 ATTCATTCTTCAAATACCCATTTCAAGGCCTCAAATTTTATCCCCAATTTTGCATAAAAATTTCA
* *
219249 A-TTTTTTTAAGGATAAACCACATGAAACATGAAATATAGA
131 ATTTTTTTTAAGGATAAAACACATGAAACATGAAATATAGC
*
219289 TAAATTAAAA-ACACCCCAAAAGCTTACATTGTAGCATTTTATTTGTTCCAACCATTATTTTAAT
1 TAAATTAAAACA-ACCCCAAAAGCTTACATTGTAGCATTCTATTTGTTCCAACCATTATTTTAAT
*
219353 CATTCATTCTTCAAATACCCATTTCAAGGCCTCAAAATTTTATCCCCAATTTTGCATTAAAAA-A
65 CATTCATTCTTCAAATACCCATTTCAAGGCCTC-AAATTTTATCCCCAATTTTGCA-TAAAAATT
* * ** *
219417 T--ATTTTTGTTAGGGATAAAACACATG-AACATGGCAGATAGC
128 TCAATTTTTTTTAAGGATAAAACACATGAAACATGAAATATAGC
219458 TAAATTAAAAACAACCCCAAAAGCTTACA
1 TAAATT-AAAACAACCCCAAAAGCTTACA
219487 CCGTATCATC
Statistics
Matches: 339, Mismatches: 22, Indels: 15
0.90 0.06 0.04
Matches are distributed among these distances:
169 19 0.06
170 162 0.48
171 128 0.38
172 30 0.09
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.34
Consensus pattern (171 bp):
TAAATTAAAACAACCCCAAAAGCTTACATTGTAGCATTCTATTTGTTCCAACCATTATTTTAATC
ATTCATTCTTCAAATACCCATTTCAAGGCCTCAAATTTTATCCCCAATTTTGCATAAAAATTTCA
ATTTTTTTTAAGGATAAAACACATGAAACATGAAATATAGC
Found at i:230563 original size:17 final size:17
Alignment explanation
Indices: 230541--230573 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
230531 AGTCTTATTA
230541 ATATTTAATTATATTTT
1 ATATTTAATTATATTTT
*
230558 ATATTTTATTATATTT
1 ATATTTAATTATATTT
230574 AAATTCGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
ATATTTAATTATATTTT
Found at i:247048 original size:30 final size:28
Alignment explanation
Indices: 246998--247262 Score: 216
Period size: 29 Copynumber: 9.0 Consensus size: 28
246988 CGGACATCCA
246998 GGGGT-AAAATGGTAATTTTTGGAAGTTTC
1 GGGGTAAAAATGG--ATTTTTGGAAGTTTC
247027 GGGGTCAAAAATTGGATTTTTGGAAG-TTC
1 GGGGT-AAAAA-TGGATTTTTGGAAGTTTC
*
247056 GGGGGTAAAAATGGAATTTTTGGAAGTTTT
1 -GGGGTAAAAATGG-ATTTTTGGAAGTTTC
* * * *
247086 AGGATCAAAAATATGATTTTTAGAAG-TTC
1 GGGGT-AAAAAT-GGATTTTTGGAAGTTTC
*
247115 AAGGGTAAAAATGGAATTTTTGGAAGTTTC
1 -GGGGTAAAAATGG-ATTTTTGGAAGTTTC
**
247145 ATGGTAAAAAATGGGATTTTTGGAAG-TTC
1 GGGGT-AAAAAT-GGATTTTTGGAAGTTTC
* *
247174 GGAGGTAAAAACGAAATTTTTGGAAGTTTC
1 GG-GGTAAAAATG-GATTTTTGGAAGTTTC
* *
247204 GCGGTCAAAAATGGGATTATTGGAAG-TTC
1 GGGGT-AAAAAT-GGATTTTTGGAAGTTTC
247233 GGGGGTAAAAATGGAATTTTTGGATAGTTT
1 -GGGGTAAAAATGG-ATTTTTGGA-AGTTT
247263 AGGGACCTTC
Statistics
Matches: 194, Mismatches: 20, Indels: 42
0.76 0.08 0.16
Matches are distributed among these distances:
28 7 0.04
29 88 0.45
30 86 0.44
31 10 0.05
32 3 0.02
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.34
Consensus pattern (28 bp):
GGGGTAAAAATGGATTTTTGGAAGTTTC
Found at i:247063 original size:59 final size:58
Alignment explanation
Indices: 246998--247266 Score: 319
Period size: 59 Copynumber: 4.6 Consensus size: 58
246988 CGGACATCCA
*
246998 GGGGTAAAATGGTAATTTTTGGAAGTTTCGGGGTCAAAAATTGGATTTTTGGAAGTTCG
1 GGGGTAAAATGG-AATTTTTGGAAGTTTCAGGGTCAAAAATTGGATTTTTGGAAGTTCG
* * * *
247057 GGGGTAAAAATGGAATTTTTGGAAGTTTTAGGATCAAAAATAT-GATTTTTAGAAGTTCA
1 GGGGT-AAAATGGAATTTTTGGAAGTTTCAGGGTCAAAAAT-TGGATTTTTGGAAGTTCG
* * * *
247116 AGGGTAAAAATGGAATTTTTGGAAGTTTCATGGTAAAAAATGGGATTTTTGGAAGTTCG
1 GGGGT-AAAATGGAATTTTTGGAAGTTTCAGGGTCAAAAATTGGATTTTTGGAAGTTCG
* * * * *
247175 GAGGTAAAAACGAAATTTTTGGAAGTTTC-GCGGTCAAAAATGGGATTATTGGAAGTTCG
1 GGGGT-AAAATGGAATTTTTGGAAGTTTCAG-GGTCAAAAATTGGATTTTTGGAAGTTCG
247234 GGGGTAAAAATGGAATTTTTGGATAGTTT-AGGG
1 GGGGT-AAAATGGAATTTTTGGA-AGTTTCAGGG
247267 ACCTTCGGGG
Statistics
Matches: 181, Mismatches: 23, Indels: 12
0.84 0.11 0.06
Matches are distributed among these distances:
59 167 0.92
60 14 0.08
ACGTcount: A:0.33, C:0.04, G:0.29, T:0.33
Consensus pattern (58 bp):
GGGGTAAAATGGAATTTTTGGAAGTTTCAGGGTCAAAAATTGGATTTTTGGAAGTTCG
Found at i:247133 original size:118 final size:118
Alignment explanation
Indices: 246999--247266 Score: 353
Period size: 118 Copynumber: 2.3 Consensus size: 118
246989 GGACATCCAG
* * * *
246999 GGGT-AAAATGGTAATTTTTGGAAGTTTCGGGGTCAAAAATTGGATTTTTGGAAGTTCGGGGGTA
1 GGGTAAAAATGG-AATTTTTGGAAGTTTCAGGGTAAAAAATGGGATTTTTGGAAGTTCGGAGGTA
* * * *
247063 AAAATGGAATTTTTGGAAGTTTTAG-GATCAAAAATATGATTTTTAGAAGTTCAA
65 AAAACGAAATTTTTGGAAG-TTTAGCGATCAAAAATAGGATTATTAGAAGTTCAA
*
247117 GGGTAAAAATGGAATTTTTGGAAGTTTCATGGTAAAAAATGGGATTTTTGGAAGTTCGGAGGTAA
1 GGGTAAAAATGGAATTTTTGGAAGTTTCAGGGTAAAAAATGGGATTTTTGGAAGTTCGGAGGTAA
* * * * **
247182 AAACGAAATTTTTGGAAGTTTCGCGGTCAAAAATGGGATTATTGGAAGTTCGG
66 AAACGAAATTTTTGGAAGTTTAGCGATCAAAAATAGGATTATTAGAAGTTCAA
247235 GGGTAAAAATGGAATTTTTGGATAGTTT-AGGG
1 GGGTAAAAATGGAATTTTTGGA-AGTTTCAGGG
247267 ACCTTCGGGG
Statistics
Matches: 131, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
117 4 0.03
118 115 0.88
119 12 0.09
ACGTcount: A:0.33, C:0.04, G:0.29, T:0.34
Consensus pattern (118 bp):
GGGTAAAAATGGAATTTTTGGAAGTTTCAGGGTAAAAAATGGGATTTTTGGAAGTTCGGAGGTAA
AAACGAAATTTTTGGAAGTTTAGCGATCAAAAATAGGATTATTAGAAGTTCAA
Found at i:248995 original size:28 final size:28
Alignment explanation
Indices: 248964--249018 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
248954 AAATGAATTT
* *
248964 TAAATTTAAATTTATAATAAATTTAAAA
1 TAAACTTAAATTTAAAATAAATTTAAAA
*
248992 TAAACTTAATTTTAAAATAAATTTAAA
1 TAAACTTAAATTTAAAATAAATTTAAA
249019 TTTGTTGGGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (28 bp):
TAAACTTAAATTTAAAATAAATTTAAAA
Found at i:249005 original size:17 final size:17
Alignment explanation
Indices: 248985--249017 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
248975 TTATAATAAA
248985 TTTAAAATAAACTTAAT
1 TTTAAAATAAACTTAAT
*
249002 TTTAAAATAAATTTAA
1 TTTAAAATAAACTTAA
249018 ATTTGTTGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (17 bp):
TTTAAAATAAACTTAAT
Found at i:249174 original size:6 final size:6
Alignment explanation
Indices: 249163--249202 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
249153 AACTAAAATG
249163 ACCCAC ACCCAC ACCCAC ACCCAC ACCCAC ACCCA- ACCCA
1 ACCCAC ACCCAC ACCCAC ACCCAC ACCCAC ACCCAC ACCCA
249203 AATGATCTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.15
6 29 0.85
ACGTcount: A:0.35, C:0.65, G:0.00, T:0.00
Consensus pattern (6 bp):
ACCCAC
Found at i:251296 original size:293 final size:293
Alignment explanation
Indices: 250750--251280 Score: 744
Period size: 293 Copynumber: 1.8 Consensus size: 293
250740 GTGAGTGTAT
* *
250750 GATTTAGGTATGTGTCCAACACAGATATGATTACATTTTTATAAATTTATCTATGTATTTAAAGC
1 GATTTAGGTATGTGTCCAACACAGATATGATTACATTTTTATAAATTTATCTACGTATTCAAAGC
* * *
250815 ATCCTTAACAGAAAAGATACTACATCCACGTGTCGAACATGAGTTCTTCAAAAAGGTGAATAACT
66 ATCCTTAAAAGAAAAGATACTACATCCACGTGTCGAACATGAGTACTTCAAAAAAGTGAATAACT
* * * * *
250880 GGAGCAACATGGACTCTCTACTTATTATGATTTCAAACATCAATAGACAAAAATGAAAGTATAAA
131 GGAGCAAAAT-GACACTCTACGTATTATGATTTCAAACATCAATAGACAAAAAGGAAAGTAGAAA
* * * *
250945 TATAAGAACCATACTGAGTAAAAGTTCATGGTAACAAATTTGTACATGACAGGAAAGATCCTTTT
195 TACAAGAACCAAACTGACTAAAAGTTAATGGTAACAAATTTGTACATGACAGGAAAGATCCTTTT
251010 AAGCTATGTTACTTGGATGCAAGTGCAAGTGTCC
260 AAGCTATGTTACTTGGATGCAAGTGCAAGTGTCC
* * *** * *
251044 GATTTAGGTATGTGTTCAACACAGATATGGTTGGGTTTTTCTAAATTTATCTACGTATTCAAAGG
1 GATTTAGGTATGTGTCCAACACAGATATGATTACATTTTTATAAATTTATCTACGTATTCAAAGC
** * * *
251109 ATCCTTAAAAGATCAGATCCTTACATCCACGTGTTGAGCATGAGTACTTCAAAAAAGTGAATAA-
66 ATCCTTAAAAGAAAAGATAC-TACATCCACGTGTCGAACATGAGTACTTCAAAAAAGTGAATAAC
*
251173 TCGGAGCAAAAT-ACACTCTAGGTATTATGATTTCAAACATCAATAGACAAAAAGGAAAGTAGAA
130 T-GGAGCAAAATGACACTCTACGTATTATGATTTCAAACATCAATAGACAAAAAGGAAAGTAGAA
* *
251237 ATACAAGAACCAAACTGACTATAAGTTAAT-TTGAACAAATTTGT
194 ATACAAGAACCAAACTGACTAAAAGTTAATGGT-AACAAATTTGT
251281 TCGTGACCTG
Statistics
Matches: 205, Mismatches: 29, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
292 1 0.00
293 83 0.40
294 73 0.36
295 48 0.23
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.30
Consensus pattern (293 bp):
GATTTAGGTATGTGTCCAACACAGATATGATTACATTTTTATAAATTTATCTACGTATTCAAAGC
ATCCTTAAAAGAAAAGATACTACATCCACGTGTCGAACATGAGTACTTCAAAAAAGTGAATAACT
GGAGCAAAATGACACTCTACGTATTATGATTTCAAACATCAATAGACAAAAAGGAAAGTAGAAAT
ACAAGAACCAAACTGACTAAAAGTTAATGGTAACAAATTTGTACATGACAGGAAAGATCCTTTTA
AGCTATGTTACTTGGATGCAAGTGCAAGTGTCC
Found at i:265588 original size:2 final size:2
Alignment explanation
Indices: 265583--265617 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
265573 GCGCACACAC
*
265583 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
265618 ATTATTAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:270433 original size:11 final size:9
Alignment explanation
Indices: 270398--270434 Score: 56
Period size: 9 Copynumber: 3.9 Consensus size: 9
270388 CCACACCGCC
270398 TATATAATA
1 TATATAATA
270407 TATATAATA
1 TATATAATA
270416 TATATAATAA
1 TATATAAT-A
270426 TAGTATAAT
1 TA-TATAAT
270435 TTGAATTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 17 0.65
10 3 0.12
11 6 0.23
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (9 bp):
TATATAATA
Found at i:271546 original size:22 final size:22
Alignment explanation
Indices: 271519--271564 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
271509 GAAACAATAC
271519 ACCGAAACAAACTGATACCAAT
1 ACCGAAACAAACTGATACCAAT
271541 ACCGAAACAAACTGATACCAAT
1 ACCGAAACAAACTGATACCAAT
271563 AC
1 AC
271565 ATATCAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.50, C:0.28, G:0.09, T:0.13
Consensus pattern (22 bp):
ACCGAAACAAACTGATACCAAT
Found at i:275124 original size:159 final size:160
Alignment explanation
Indices: 274834--275139 Score: 553
Period size: 159 Copynumber: 1.9 Consensus size: 160
274824 ACCACAACAA
*
274834 CAATCAATCAACCAACCAACAACTACAACAAATAAAAGAATCCCTTTATCTAAACATCAAATAAA
1 CAATCAATCAACCAACCAACAACTACAAAAAATAAAAGAATCCCTTTATCTAAACATCAAATAAA
274899 TCATTAAATTCCATTAAAAAACCCTGATTGTGGAAGACTCAAACGGGAAAACCCTCAAAGTTGTT
66 TCATTAAATTCCATTAAAAAACCCTGATTGTGGAAGACTCAAACGGGAAAACCCTCAAAGTTGTT
274964 TCCAAACTATAAATAAATTAAAAACAATTT
131 TCCAAACTATAAATAAATTAAAAACAATTT
*
274994 CAATCAATCAATCAACCAACAACTACAAAAAATAAAAGAATCCCTTTATCT-AACATCAAATAAA
1 CAATCAATCAACCAACCAACAACTACAAAAAATAAAAGAATCCCTTTATCTAAACATCAAATAAA
* *
275058 TCATTAAATTCCATTTAAAAACCCTGATTGTTGAAGA-TCCAAACGGGAAAACCCTCAAAGTTGT
66 TCATTAAATTCCATTAAAAAACCCTGATTGTGGAAGACT-CAAACGGGAAAACCCTCAAAGTTGT
275122 TTCCAAACTATAAATAAA
130 TTCCAAACTATAAATAAA
275140 AGAATACCTT
Statistics
Matches: 141, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
158 1 0.01
159 91 0.65
160 49 0.35
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (160 bp):
CAATCAATCAACCAACCAACAACTACAAAAAATAAAAGAATCCCTTTATCTAAACATCAAATAAA
TCATTAAATTCCATTAAAAAACCCTGATTGTGGAAGACTCAAACGGGAAAACCCTCAAAGTTGTT
TCCAAACTATAAATAAATTAAAAACAATTT
Found at i:275219 original size:113 final size:110
Alignment explanation
Indices: 275023--275242 Score: 314
Period size: 113 Copynumber: 2.0 Consensus size: 110
275013 CAACTACAAA
* ***
275023 AAATAAAAGAATCCCTTTATCTAACATCAAATAAATCATTAAATTCCATTTAAAAACCCTGATTG
1 AAATAAAAGAATACCTTTATCTAACATCAAATAAATCATTAAATTCCAGAAAAAAACCCTGATTG
* * * *
275088 TTGAAGATCCAAACGGGAAAACCCTCAAAGTTGTTTCCAAACTAT
66 TGGAAGATCCAAAAGGGAAAACCCTCAAAATCGTTTCCAAACTAT
* *
275133 AAATAAAAGAATACCTTTATCTAAACATTAAATAAATCATTAATTTCCAACGAAAAAAACCCTGA
1 AAATAAAAGAATACCTTTATCT-AACATCAAATAAATCATTAAATTCC-A-GAAAAAAACCCTGA
*
275198 TTGTGGAAGATTCAAAAGGGAAAACCCTCAAAATCGTTTCCAAAC
63 TTGTGGAAGATCCAAAAGGGAAAACCCTCAAAATCGTTTCCAAAC
275243 AACAATTAAA
Statistics
Matches: 96, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
110 21 0.22
111 23 0.24
112 1 0.01
113 51 0.53
ACGTcount: A:0.45, C:0.19, G:0.10, T:0.26
Consensus pattern (110 bp):
AAATAAAAGAATACCTTTATCTAACATCAAATAAATCATTAAATTCCAGAAAAAAACCCTGATTG
TGGAAGATCCAAAAGGGAAAACCCTCAAAATCGTTTCCAAACTAT
Found at i:276527 original size:12 final size:12
Alignment explanation
Indices: 276510--276538 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
276500 TAAATTTTGG
276510 ATTTTTTTTATT
1 ATTTTTTTTATT
276522 ATTTTTTTTATT
1 ATTTTTTTTATT
276534 -TTTTT
1 ATTTTT
276539 AATTTTTGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (12 bp):
ATTTTTTTTATT
Found at i:283865 original size:38 final size:38
Alignment explanation
Indices: 283813--283885 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
283803 AGACAAAACT
*
283813 GAATAGTTGAGTGACCAGTTTGTAACTTTTCATAGGTG
1 GAATAGTTGAGTGACCAGTTTATAACTTTTCATAGGTG
*
283851 GAATAGTT-AGGTGACCATTTTATAACTTTTCATAG
1 GAATAGTTGA-GTGACCAGTTTATAACTTTTCATAG
283886 TTCGGTGACT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 1 0.03
38 31 0.97
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (38 bp):
GAATAGTTGAGTGACCAGTTTATAACTTTTCATAGGTG
Found at i:286266 original size:93 final size:93
Alignment explanation
Indices: 285990--286358 Score: 433
Period size: 93 Copynumber: 4.0 Consensus size: 93
285980 TAAATGTATC
* * * * * * ** *
285990 ATGGAGGCACTTCTACTGAAATTAAATTGCATATTGCCCCCGCAAAAATAGG-TAGATTAGTTTT
1 ATGGAGGCCCTTGTACTGAAGTCAAATTGCATTTTGCCTCCTAAAAAAT-GGATAGATTAATTTT
*
286054 TGTACGTTAGATCAAAGAATAAATTGATT
65 TGTACGTTAGATCAAAGAGTAAATTGATT
* * * *
286083 ATGAAGGCCCTTGTACTGAAGTCAAATTTCA--TTGTCTCCTAAAAAAT-GAGTAGATTAGTTTT
1 ATGGAGGCCCTTGTACTGAAGTCAAATTGCATTTTGCCTCCTAAAAAATGGA-TAGATTAATTTT
* *
286145 TGTACGTCAGATAAAAGAGTAAATTGATT
65 TGTACGTTAGATCAAAGAGTAAATTGATT
* * *
286174 ATGGAGGCCCTTGTACTGAAGTCAAATTGCATTTTGGCTACTAAAAAATGGATAGATTAAATTTT
1 ATGGAGGCCCTTGTACTGAAGTCAAATTGCATTTTGCCTCCTAAAAAATGGATAGATTAATTTTT
286239 GTACGTTAGATCAAAGTA-TAAATTGATT
66 GTACGTTAGATCAAAG-AGTAAATTGATT
* * * * * * *
286267 ATGGAGGCCCTTGCATTGAAATCAAATTGCATTTTGCCTCCTCAAAAATGGGTAGATTAGTTGTT
1 ATGGAGGCCCTTGTACTGAAGTCAAATTGCATTTTGCCTCCTAAAAAATGGATAGATTAATTTTT
*
286332 ATACGTTAGATCAAAGAGTAAATTGAT
66 GTACGTTAGATCAAAGAGTAAATTGAT
286359 CATGATTCTG
Statistics
Matches: 237, Mismatches: 32, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
89 1 0.00
91 79 0.33
92 1 0.00
93 153 0.65
94 3 0.01
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (93 bp):
ATGGAGGCCCTTGTACTGAAGTCAAATTGCATTTTGCCTCCTAAAAAATGGATAGATTAATTTTT
GTACGTTAGATCAAAGAGTAAATTGATT
Found at i:290500 original size:24 final size:24
Alignment explanation
Indices: 290450--290495 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 24
290440 ACTCATCCAT
*
290450 ATTATTATTTTTTTAAATATTTAA
1 ATTATTATTATTTTAAATATTTAA
290474 ATTA-TATTATTTT-AATATTTAA
1 ATTATTATTATTTTAAATATTTAA
290496 TAATTTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 9 0.43
23 8 0.38
24 4 0.19
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (24 bp):
ATTATTATTATTTTAAATATTTAA
Found at i:291039 original size:4 final size:4
Alignment explanation
Indices: 291032--291070 Score: 69
Period size: 4 Copynumber: 9.8 Consensus size: 4
291022 TATATATATA
*
291032 TATT TATT TATT CATT TATT TATT TATT TATT TATT TAT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TAT
291071 AAATATCAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (4 bp):
TATT
Found at i:291484 original size:22 final size:23
Alignment explanation
Indices: 291459--291503 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
291449 TTTTTAATTT
291459 TAATT-AA-TTAAAATATTTAAAA
1 TAATTGAAGTTAAAAT-TTTAAAA
*
291481 TAATTGAAGTTAAAGTTTTAAAA
1 TAATTGAAGTTAAAATTTTAAAA
291504 ATTGTGATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 5 0.25
23 9 0.45
24 6 0.30
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (23 bp):
TAATTGAAGTTAAAATTTTAAAA
Found at i:294844 original size:22 final size:22
Alignment explanation
Indices: 294819--294861 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
294809 AATTATTGCT
294819 TTGCTATTATTTCACTATTATA
1 TTGCTATTATTTCACTATTATA
* *
294841 TTGCTATTATTTTATTATTAT
1 TTGCTATTATTTCACTATTAT
294862 TGTTTGGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.26, C:0.09, G:0.05, T:0.60
Consensus pattern (22 bp):
TTGCTATTATTTCACTATTATA
Found at i:302200 original size:52 final size:51
Alignment explanation
Indices: 302138--302279 Score: 194
Period size: 51 Copynumber: 2.7 Consensus size: 51
302128 TTGTTTACCC
*
302138 TAATTATAATACAAATGGCAACGAAATTATAATTATGTTGGAACTTGGCTTT
1 TAATTATAATACAAATGG-GACGAAATTATAATTATGTTGGAACTTGGCTTT
* * * *
302190 TAATTATAATACGAATGGGATGAAATTATAATTACGTTGGAACTTGTCTTT
1 TAATTATAATACAAATGGGACGAAATTATAATTATGTTGGAACTTGGCTTT
* * *
302241 TAATAATAATACCAATGGGGACGAAATTATGATTATGTT
1 TAATTATAATACAAAT-GGGACGAAATTATAATTATGTT
302280 TGAAAAAGAT
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
51 43 0.54
52 36 0.46
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (51 bp):
TAATTATAATACAAATGGGACGAAATTATAATTATGTTGGAACTTGGCTTT
Found at i:307859 original size:21 final size:23
Alignment explanation
Indices: 307834--307880 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
307824 TTTTATGTTT
* *
307834 AAAATTTAAG-AAAA-ATAAATA
1 AAAATATAAGTAAAACATAAACA
307855 AAAATATAAGTAAAACATAAACA
1 AAAATATAAGTAAAACATAAACA
307878 AAA
1 AAA
307881 TTGTTGATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 9 0.41
22 4 0.18
23 9 0.41
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.19
Consensus pattern (23 bp):
AAAATATAAGTAAAACATAAACA
Found at i:317134 original size:2 final size:2
Alignment explanation
Indices: 317121--317154 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
317111 AATACAATTA
*
317121 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
317155 TTGCTAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:320288 original size:33 final size:32
Alignment explanation
Indices: 320203--320289 Score: 86
Period size: 33 Copynumber: 2.6 Consensus size: 32
320193 TTTGGGTTTA
*
320203 GAGTTTAAATGTTCAAGGTTTGAGGTTTGAATTC
1 GAGTTT-AA-GTTCAAGGTTTGAGGTTCGAATTC
* *
320237 GAGTTTAGGATTCAAGGTTT-AGGGTTCGAGTTC
1 GAGTTTAAG-TTCAAGGTTTGA-GGTTCGAATTC
*
320270 GAGTTTGAAGTTCGAGGTTT
1 GAGTTT-AAGTTCAAGGTTT
320290 CGATTCAAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
32 2 0.04
33 35 0.78
34 8 0.18
ACGTcount: A:0.23, C:0.07, G:0.31, T:0.39
Consensus pattern (32 bp):
GAGTTTAAGTTCAAGGTTTGAGGTTCGAATTC
Found at i:320749 original size:20 final size:21
Alignment explanation
Indices: 320724--320765 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
320714 ATTCACAACG
320724 TTAAA-TTCAAAGATTTTATA
1 TTAAATTTCAAAGATTTTATA
320744 TTAAATTTCAAAGATTTTATA
1 TTAAATTTCAAAGATTTTATA
320765 T
1 T
320766 GTACATTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.48
Consensus pattern (21 bp):
TTAAATTTCAAAGATTTTATA
Found at i:322210 original size:18 final size:18
Alignment explanation
Indices: 322187--322229 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
322177 ATCACACGAG
322187 GACTCGATACATCCACAA
1 GACTCGATACATCCACAA
322205 GACTCGATACATCCACAA
1 GACTCGATACATCCACAA
322223 GACTCGA
1 GACTCGA
322230 AACCGAACCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.37, C:0.33, G:0.14, T:0.16
Consensus pattern (18 bp):
GACTCGATACATCCACAA
Found at i:352343 original size:23 final size:23
Alignment explanation
Indices: 352317--352364 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
352307 CCTCCAGGTA
352317 AAATAACATCCTTATCTTTCCAT
1 AAATAACATCCTTATCTTTCCAT
352340 AAATAACATCCTTATCTTTCCAT
1 AAATAACATCCTTATCTTTCCAT
352363 AA
1 AA
352365 TGGTGTAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.25, G:0.00, T:0.38
Consensus pattern (23 bp):
AAATAACATCCTTATCTTTCCAT
Found at i:355023 original size:2 final size:2
Alignment explanation
Indices: 355016--355050 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
355006 TCCAACTCGG
355016 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
355051 AACACGTACC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:357783 original size:30 final size:30
Alignment explanation
Indices: 357749--357819 Score: 72
Period size: 30 Copynumber: 2.4 Consensus size: 30
357739 TTAATAAAAG
*
357749 TAAAATTATACTTTAAGCTCCTAAAAATGA
1 TAAAATTATAATTTAAGCTCCTAAAAATGA
* ** *
357779 TAAAAATT-TAATTTAATCTTTTAAAAATTA
1 T-AAAATTATAATTTAAGCTCCTAAAAATGA
*
357809 TAAAAATATAA
1 TAAAATTATAA
357820 ATTGATAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
29 5 0.15
30 22 0.67
31 6 0.18
ACGTcount: A:0.52, C:0.07, G:0.03, T:0.38
Consensus pattern (30 bp):
TAAAATTATAATTTAAGCTCCTAAAAATGA
Found at i:357838 original size:25 final size:24
Alignment explanation
Indices: 357802--357849 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
357792 TAATCTTTTA
* * *
357802 AAAATTATAAAAATATAAATTGAT
1 AAAATGATAAAAAAAAAAATTGAT
357826 AAAATGATAAAAAAAAAAAATTGA
1 AAAATGAT-AAAAAAAAAAATTGA
357850 GTTTCACCCC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (24 bp):
AAAATGATAAAAAAAAAAATTGAT
Found at i:362536 original size:57 final size:56
Alignment explanation
Indices: 362448--362560 Score: 208
Period size: 57 Copynumber: 2.0 Consensus size: 56
362438 CTCGAATGTA
*
362448 TGTCTATCTTGTCTGAATCATCCTGAAAAGCTTTTCCTGTTCCAAGGTAAAATAACT
1 TGTCTATCTTGTCCGAATCATCCTGAAAAGCTTTTCCTGTTCCAAGGT-AAATAACT
362505 TGTCTATCTTGTCCGAATCATCCTGAAAAGCTTTTCCTGTTCCAAGGTAAATAACT
1 TGTCTATCTTGTCCGAATCATCCTGAAAAGCTTTTCCTGTTCCAAGGTAAATAACT
362561 CGTGTATCCA
Statistics
Matches: 55, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
56 8 0.15
57 47 0.85
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.36
Consensus pattern (56 bp):
TGTCTATCTTGTCCGAATCATCCTGAAAAGCTTTTCCTGTTCCAAGGTAAATAACT
Found at i:364257 original size:31 final size:31
Alignment explanation
Indices: 364214--364311 Score: 83
Period size: 31 Copynumber: 3.2 Consensus size: 31
364204 CATTTGGTCT
* *
364214 AGGTGCCAAATTGAACATTGAATCCAAACTC
1 AGGTACCAAATTGAACATTGAAACCAAACTC
* ** *
364245 AGGTACCAAATTGGAACA--AAAAAAAAACTT
1 AGGTACCAAATT-GAACATTGAAACCAAACTC
* * * *
364275 AGGTATCAAATTGAATATTGAAGCCAAACAC
1 AGGTACCAAATTGAACATTGAAACCAAACTC
364306 AGGTAC
1 AGGTAC
364312 TAATCATATA
Statistics
Matches: 49, Mismatches: 15, Indels: 6
0.70 0.21 0.09
Matches are distributed among these distances:
29 4 0.08
30 18 0.37
31 22 0.45
32 5 0.10
ACGTcount: A:0.46, C:0.17, G:0.16, T:0.20
Consensus pattern (31 bp):
AGGTACCAAATTGAACATTGAAACCAAACTC
Found at i:367056 original size:370 final size:358
Alignment explanation
Indices: 366374--367254 Score: 934
Period size: 394 Copynumber: 2.4 Consensus size: 358
366364 TTTCTAAGTG
* * * *
366374 TGCACTGTTACTTAAAATTCAGTATTAAACCTCTGTTA-TAACAAAACACAATTCAACTACATTC
1 TGCACTTTTACTTAAAACTCAGTATTAAACCTC---TACT---AAAAGATAATTCAACTACATTC
* * *
366438 TACATTTCATCATCTTCA-CTATTCAATCCACATGCAACATTTCTC-AGGCAGATGCATTTTACA
60 TACATTTCATCATCTTCATC-ATTCAATCCACATCCAACATTTCTCTAAGCACATGCATTTTACA
* ** *
366501 ATGTTGATTCCATTCCATTTCCTCAGTTCCCTTCCCCCCTAGGTTACAAATTCATTAAGTATATC
124 ATGTTGATTCCATTCCATTCCCTCAGTTCCCTTCCCCCCTAGGTTACAAATTCATTAAAAATAGC
* * * * * * *
366566 TCCAATTAAAGTCAAATCAATCACATCATGGCTTCGAATTTAAAATACCTTATTATAGAATTTTG
189 TCCAATTAAACTCAAATCAATCACATCATAGCTTCAAATTCAAAATACCTAATTATACAATTTTC
* * * * *
366631 CAAGAAAACAAACGGATCATAAAGTTACGAATTGCAAATCTACAATAATTTCATTAAT-TC-G-G
254 CAAAAAAAAAAACGGAGCATAAAGTTACAAATTCCAAATCTACAATAATTTCATTAATATCAGCG
*
366693 AAGCTAAGTAATAAACGATGCAAAACATTATTTCTACACA
319 AAGCTAAGTAATAAACGATCCAAAACATTATTTCTACACA
* * * *
366733 TGCACTTTTACTTAAAACTCAGTATTAAACCTCTACTAGAAGATAATTCAAATAAATTATACATT
1 TGCACTTTTACTTAAAACTCAGTATTAAACCTCTACTAAAAGATAATTCAACTACATTCTACATT
** * * *
366798 TCATCATCTTCATCATTTGATCCACATCCTACAATTCTCTAAGCACATGCATTTCACAATGTTGA
66 TCATCATCTTCATCATTCAATCCACATCCAACATTTCTCTAAGCACATGCATTTTACAATGTTGA
366863 TTCCATTCCATTCCCTTTCA-TTCCTCGGTTTCCTTCCCCCTAGGTTACAAATTCA-TAAAAATA
131 TTCCATTCCATTCCC--TCAGTTCC-C---TT-C--CCCCCTAGGTTACAAATTCATTAAAAATA
* *
366926 GCTCCAATTAAACTCAAAACAGAGATCAATCTCATCATAGCTTCAAATTCAAAATACCTAATTCT
187 GCTCCAATTAAACT-----CA-A-ATCAATCACATCATAGCTTCAAATTCAAAATACCTAATTAT
*
366991 ACAA-TTTCCAACAAAAAAAAAACGTAGCATAAAGTTACAAATTCCAAATCTACAATAATTTCAT
245 ACAATTTTCC-A-AAAAAAAAAACGGAGCATAAAGTTACAAATTCCAAATCTACAATAATTTCAT
367055 TAATCCAGAATCTAGAAAACTTCTCCATCCTGAAGCTAAGTAATAAACGATCCAAAACATTATTT
308 TAAT-----ATC-AG--------------C-GAAGCTAAGTAATAAACGATCCAAAACATTATTT
367120 CTACACA
352 CTACACA
*
367127 TGCACTTTTACTTAAAATTCAGTATTAAACCTCTACTAAAAGATAATTCAACTACATTCTACATT
1 TGCACTTTTACTTAAAACTCAGTATTAAACCTCTACTAAAAGATAATTCAACTACATTCTACATT
* *
367192 TCATCATCCTCATCATTCAATCCACATCCAACATTTCTCTAAGCACATGCATTTTACAGTGTT
66 TCATCATCTTCATCATTCAATCCACATCCAACATTTCTCTAAGCACATGCATTTTACAATGTT
367255 TGGTTTCATT
Statistics
Matches: 429, Mismatches: 48, Indels: 55
0.81 0.09 0.10
Matches are distributed among these distances:
354 54 0.13
355 37 0.09
356 6 0.01
357 5 0.01
359 31 0.07
360 2 0.00
361 1 0.00
362 18 0.04
363 20 0.05
367 2 0.00
368 5 0.01
369 39 0.09
370 50 0.12
376 2 0.00
378 1 0.00
394 156 0.36
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.32
Consensus pattern (358 bp):
TGCACTTTTACTTAAAACTCAGTATTAAACCTCTACTAAAAGATAATTCAACTACATTCTACATT
TCATCATCTTCATCATTCAATCCACATCCAACATTTCTCTAAGCACATGCATTTTACAATGTTGA
TTCCATTCCATTCCCTCAGTTCCCTTCCCCCCTAGGTTACAAATTCATTAAAAATAGCTCCAATT
AAACTCAAATCAATCACATCATAGCTTCAAATTCAAAATACCTAATTATACAATTTTCCAAAAAA
AAAAACGGAGCATAAAGTTACAAATTCCAAATCTACAATAATTTCATTAATATCAGCGAAGCTAA
GTAATAAACGATCCAAAACATTATTTCTACACA
Found at i:369135 original size:29 final size:29
Alignment explanation
Indices: 369092--369155 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
369082 TTAGACTTAT
369092 TTGATTCCATTTAATAGA-ATAGGAATTAAA
1 TTGA-TCCATTTAATA-ATATAGGAATTAAA
* *
369122 TTGATCCATTTAATAATATAGGGATTAAT
1 TTGATCCATTTAATAATATAGGAATTAAA
369151 TTGAT
1 TTGAT
369156 ACATCCCCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
28 1 0.03
29 26 0.84
30 4 0.13
ACGTcount: A:0.39, C:0.06, G:0.14, T:0.41
Consensus pattern (29 bp):
TTGATCCATTTAATAATATAGGAATTAAA
Found at i:369518 original size:2 final size:2
Alignment explanation
Indices: 369511--369545 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
369501 CATGTTTTAT
369511 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
369546 TATAAATTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:370374 original size:187 final size:187
Alignment explanation
Indices: 369717--370633 Score: 929
Period size: 187 Copynumber: 4.9 Consensus size: 187
369707 TTTGATTGGT
* * * * **
369717 TCGGAATTATAGTTATTTATGATGTTGATAAGAGCTAGGGTTTGTGGTTTAAGGATGCCTTTGCT
1 TCGGAACTATAGCTA-TTATGGTGTTGATGAGAGCTAGGG-TTGTGGTTTAAGGACCCCTTTGCT
* ** * * * *
369782 TGAA-CTGAATGCTTTGCTAATGGGTTTAGAGTGATTTAGCTAGGGTGGATTTAGGGTTTTGTGG
64 CGAACCAAAAT-CTTTGCTAATGGGTTTAGAGTTATTTGGCTAGGGAGGATTTAGGGTTTTGTGA
* * * *
369846 TTATCATCTAACACTTTTATGAAACCTCGCATTTTCTGTGTTTGATTAGTTCGAAGCCTTCA
128 TTATCATCCAACGCTTTTATG-AACCTCACA-TTTCTGTGTTTGATTAGTTTGAAGCCTTCA
* ** * * * *
369908 TCAGAACTATAGCTATTACAGTGTTGATGAGAGATAGGGTTGTGGTTGAAGGGCCTCTTTGCTCG
1 TCGGAACTATAGCTATTATGGTGTTGATGAGAGCTAGGGTTGTGGTTTAAGGACCCCTTTGCTCG
* * * *
369973 AACCAAGAGCTTTACTAATGGGTTTAGAGTTATTTGGCTAGGGAGGACTTAGGGTTTTGTGATTA
66 AACCAAAATCTTTGCTAATGGGTTTAGAGTTATTTGGCTAGGGAGGATTTAGGGTTTTGTGATTA
* * *
370038 TCATCGAA------TATGAACCTCGTCATATT-TGTGTTTGATTAGTTTGAAGCCTTCG
131 TCATCCAACGCTTTTATGAACCTC-ACAT-TTCTGTGTTTGATTAGTTTGAAGCCTTCA
* * * * ****
370090 TTGGAACTATAGC-ATTATGGTGTTGATGAGTGCTGGGGCTGTGGTTTAAGGATGATTTTGCTCG
1 TCGGAACTATAGCTATTATGGTGTTGATGAGAGCTAGGGTTGTGGTTTAAGGACCCCTTTGCTCG
** * * *
370154 AA-CTGAATGCTTTGCTAATGGGTTCATAGTTATTTGGCTAGGGAGGATTTAGGGCTTTGTGATT
66 AACCAAAAT-CTTTGCTAATGGGTTTAGAGTTATTTGGCTAGGGAGGATTTAGGGTTTTGTGATT
* *
370218 ATCATCCATCGCTTTTATGAACCTCACATTTCTGTGTTTGATTCA-TTCT-AAGTCTTCA
130 ATCATCCAACGCTTTTATGAACCTCACATTTCTGTGTTTGATT-AGTT-TGAAGCCTTCA
* * * *
370276 TCGGAACTATAGCTATTATGGTGTTGATGAGAGCTAGGGTTGTGGTTGAAGAACCCCTTTACTCA
1 TCGGAACTATAGCTATTATGGTGTTGATGAGAGCTAGGGTTGTGGTTTAAGGACCCCTTTGCTCG
* * *
370341 AACCAAAATCTTTGGTAATAGGTTTAGAGTTATTTGGTTAGGGAGGATTTAGGGTTTTGTGATTA
66 AACCAAAATCTTTGCTAATGGGTTTAGAGTTATTTGGCTAGGGAGGATTTAGGGTTTTGTGATTA
* * * * *
370406 TCATCGAACGCTTTCATGAACCTCGCATTCTCTGTGTTTGATTCA-TTTGAAGGCTTCG
131 TCATCCAACGCTTTTATGAACCTCACATT-TCTGTGTTTGATT-AGTTTGAAGCCTTCA
* * * * * *
370464 TCGGAACTATAGTTATTGTGGTGTTGATGAGAGCTAGGTTTGCGGTTTAAGG-CCGCCTTTACTT
1 TCGGAACTATAGCTATTATGGTGTTGATGAGAGCTAGGGTTGTGGTTTAAGGACC-CCTTTGCTC
* * *
370528 GAACCAAAAGCTTTG-----GGGTTTAGAGTTATTTAGCTAGGGATGATTTAGGGTTTTGTGATT
65 GAACCAAAATCTTTGCTAATGGGTTTAGAGTTATTTGGCTAGGGAGGATTTAGGGTTTTGTGATT
* *
370588 ATCATCAAACGCTTTTATGAAACCTCACACCCTT-TGTGTTTGATTA
130 ATCATCCAACGCTTTTATG-AACCTCACA--TTTCTGTGTTTGATTA
370634 ATTCAAAGCA
Statistics
Matches: 606, Mismatches: 99, Indels: 50
0.80 0.13 0.07
Matches are distributed among these distances:
180 2 0.00
181 98 0.16
182 42 0.07
183 67 0.11
184 19 0.03
185 3 0.00
186 36 0.06
187 132 0.22
188 95 0.16
189 79 0.13
190 21 0.03
191 12 0.02
ACGTcount: A:0.23, C:0.13, G:0.25, T:0.38
Consensus pattern (187 bp):
TCGGAACTATAGCTATTATGGTGTTGATGAGAGCTAGGGTTGTGGTTTAAGGACCCCTTTGCTCG
AACCAAAATCTTTGCTAATGGGTTTAGAGTTATTTGGCTAGGGAGGATTTAGGGTTTTGTGATTA
TCATCCAACGCTTTTATGAACCTCACATTTCTGTGTTTGATTAGTTTGAAGCCTTCA
Found at i:370800 original size:165 final size:161
Alignment explanation
Indices: 370507--370835 Score: 396
Period size: 165 Copynumber: 2.0 Consensus size: 161
370497 CTAGGTTTGC
* * * *
370507 GGTTTAAGGCCGCCTTTACTTGAACCAAAAGCTTTGGGGTTTAGAGTTATTTAGCTAGGGATGAT
1 GGTTTAAGGACGCCTTTACTTGAACCAAAAGCTTTGGGGTTTAGAATTATTTAGCTAGGGAGGAC
* * *
370572 TTAGGGTTTTGTGATTATCATCAAACGCTTTTATGAAACCTCACACCCTTTGTGTTTGATTAATT
66 TTAGGGTTTTGTGATTATCATCAAACGCTTCTATGAAACCTCACACCCTCTGTGTTCGATTAATT
* *
370637 CAAAGCATTTGTTAGAACTACAGCTA-TTAT
131 CAAAGAACTTGTTAGAACTACAGCTATTTAT
* * * *
370667 GGTTTAAGGATGCCTTTACTTGGACCAAAAGCTTTACCAATGGGTTTAGAATTATTTGGCTAGGG
1 GGTTTAAGGACGCCTTTACTTGAACCAAAAGCTTT-----GGGGTTTAGAATTATTTAGCTAGGG
**
370732 AGGACTTAGGGTTTTGTGATTATCATTGGAACGCTTCTATG-AACCT-AGCACTCC-CTGTGTTC
61 AGGACTTAGGGTTTTGTGATTATCA-TCAAACGCTTCTATGAAACCTCA-CAC-CCTCTGTGTTC
* * *
370794 GATTAATTCGAAGAACTTGTTGGAACTATAGCTATTTAT
123 GATTAATTCAAAGAACTTGTTAGAACTACAGCTATTTAT
370833 GGT
1 GGT
370836 GTTTATGAGA
Statistics
Matches: 142, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
160 32 0.23
164 1 0.01
165 88 0.62
166 21 0.15
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (161 bp):
GGTTTAAGGACGCCTTTACTTGAACCAAAAGCTTTGGGGTTTAGAATTATTTAGCTAGGGAGGAC
TTAGGGTTTTGTGATTATCATCAAACGCTTCTATGAAACCTCACACCCTCTGTGTTCGATTAATT
CAAAGAACTTGTTAGAACTACAGCTATTTAT
Found at i:375792 original size:12 final size:12
Alignment explanation
Indices: 375777--375801 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
375767 TTTATCTTTC
375777 CTTTTTTTTTTT
1 CTTTTTTTTTTT
375789 CTTTTTTTTTTT
1 CTTTTTTTTTTT
375801 C
1 C
375802 ATTCTCTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (12 bp):
CTTTTTTTTTTT
Found at i:378987 original size:15 final size:16
Alignment explanation
Indices: 378958--378987 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
378948 TAAATATTAA
378958 ACAGATCTAATTTTTT
1 ACAGATCTAATTTTTT
378974 ACAGATCT-ATTTTT
1 ACAGATCTAATTTTT
378988 AAGTCATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.30, C:0.13, G:0.07, T:0.50
Consensus pattern (16 bp):
ACAGATCTAATTTTTT
Found at i:379801 original size:29 final size:31
Alignment explanation
Indices: 379751--379830 Score: 87
Period size: 29 Copynumber: 2.7 Consensus size: 31
379741 TAAATAATTT
* * **
379751 TAAAATTATTAGAATTAATTTTT-TTAAT-A
1 TAAAATTATTAAAATGAATTTTTAAAAATAA
*
379780 TAAAATTATTAAAATGATTTTTTAAAAATAA
1 TAAAATTATTAAAATGAATTTTTAAAAATAA
379811 TAAAATTATT-AAAT-AATTTT
1 TAAAATTATTAAAATGAATTTT
379831 AATTTTTAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
29 25 0.58
30 7 0.16
31 11 0.26
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (31 bp):
TAAAATTATTAAAATGAATTTTTAAAAATAA
Found at i:379810 original size:28 final size:29
Alignment explanation
Indices: 379751--379810 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
379741 TAAATAATTT
* * *
379751 TAAAATTATTAGAATTAATTTTTTTAATA
1 TAAAATTATTAGAAATAATTTTTTAAAAA
*
379780 TAAAATTATTA-AAATGATTTTTTAAAAA
1 TAAAATTATTAGAAATAATTTTTTAAAAA
379808 TAA
1 TAA
379811 TAAAATTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 16 0.59
29 11 0.41
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (29 bp):
TAAAATTATTAGAAATAATTTTTTAAAAA
Found at i:380571 original size:17 final size:17
Alignment explanation
Indices: 380549--380583 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
380539 TTTGATTTTT
380549 AAAAATTTTTAGATTTC
1 AAAAATTTTTAGATTTC
380566 AAAAATTTTTAGATTTC
1 AAAAATTTTTAGATTTC
380583 A
1 A
380584 GTACTGTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.46
Consensus pattern (17 bp):
AAAAATTTTTAGATTTC
Found at i:385281 original size:29 final size:27
Alignment explanation
Indices: 385227--385292 Score: 73
Period size: 29 Copynumber: 2.4 Consensus size: 27
385217 TTTTTCATGC
385227 ATTT-AAAATTTAGCCCTTTTACTTTTA
1 ATTTAAAAATTTAGCCCTTTTA-TTTTA
*
385254 ATTTAAGAAATTTAGCCCTCTATT-TTTTT
1 ATTTAA-AAATTTAGCCCT-T-TTATTTTA
385283 ATTTAAAAAT
1 ATTTAAAAAT
385293 ATAAATTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
27 4 0.12
28 5 0.15
29 22 0.65
30 1 0.03
31 2 0.06
ACGTcount: A:0.33, C:0.12, G:0.05, T:0.50
Consensus pattern (27 bp):
ATTTAAAAATTTAGCCCTTTTATTTTA
Found at i:387671 original size:16 final size:16
Alignment explanation
Indices: 387652--387703 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
387642 AAAGTTAATA
387652 ACCTAAACTTGAAATG
1 ACCTAAACTTGAAATG
*
387668 ACCTAAA-TCTGAAACTA
1 ACCTAAACT-TGAAA-TG
* *
387685 ACCTGAACCTGAAATG
1 ACCTAAACTTGAAATG
387701 ACC
1 ACC
387704 CAAAATTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
15 1 0.03
16 16 0.55
17 12 0.41
ACGTcount: A:0.42, C:0.25, G:0.12, T:0.21
Consensus pattern (16 bp):
ACCTAAACTTGAAATG
Found at i:393290 original size:20 final size:20
Alignment explanation
Indices: 393267--393319 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
393257 AAATTTCACG
* *
393267 AAGACAAAAAAAATGAGATC
1 AAGACAAAAAAAATGACATA
* *
393287 AAGACCAAAAGAAATTACATA
1 AAGA-CAAAAAAAATGACATA
393308 AAGA-AAAAAAAA
1 AAGACAAAAAAAA
393320 CCTTTAACGA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
19 7 0.26
20 4 0.15
21 16 0.59
ACGTcount: A:0.70, C:0.09, G:0.11, T:0.09
Consensus pattern (20 bp):
AAGACAAAAAAAATGACATA
Found at i:393571 original size:3 final size:3
Alignment explanation
Indices: 393565--393589 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
393555 ATTTGCAGAT
393565 GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA G
393590 CAATGGCGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:400067 original size:18 final size:19
Alignment explanation
Indices: 400038--400080 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
400028 AAGTTTTATT
*
400038 TATTTTTATATTTTATAAA
1 TATTTTTATATTATATAAA
400057 TATTTTT-TATTATATAAA
1 TATTTTTATATTATATAAA
*
400075 AATTTT
1 TATTTT
400081 CACCAAAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
TATTTTTATATTATATAAA
Found at i:400720 original size:19 final size:20
Alignment explanation
Indices: 400683--400721 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
400673 CAGTTTCCTA
**
400683 TGTTTATGTATTTTTTTTTT
1 TGTTTATGTATTTGGTTTTT
400703 TGTTTAT-TATTTGGTTTTT
1 TGTTTATGTATTTGGTTTTT
400722 AAAATTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.10, C:0.00, G:0.13, T:0.77
Consensus pattern (20 bp):
TGTTTATGTATTTGGTTTTT
Found at i:400720 original size:20 final size:20
Alignment explanation
Indices: 400683--400721 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
400673 CAGTTTCCTA
*
400683 TGTTTATGTATTTTTTTTTT
1 TGTTTATGTATTTGTTTTTT
400703 TGTTTAT-TATTTGGTTTTT
1 TGTTTATGTATTT-GTTTTT
400722 AAAATTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.10, C:0.00, G:0.13, T:0.77
Consensus pattern (20 bp):
TGTTTATGTATTTGTTTTTT
Found at i:400822 original size:18 final size:18
Alignment explanation
Indices: 400799--400834 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
400789 ATTATATAAT
400799 ATTTAAATATATAGTTTA
1 ATTTAAATATATAGTTTA
* *
400817 ATTTAAATGTATATTTTA
1 ATTTAAATATATAGTTTA
400835 TTTTTGGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53
Consensus pattern (18 bp):
ATTTAAATATATAGTTTA
Found at i:400978 original size:6 final size:6
Alignment explanation
Indices: 400967--401002 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
400957 TTAAAATATT
*
400967 TAAAAA TAAAAA TAAAAA TAAAATA AAAAAA TAAAA
1 TAAAAA TAAAAA TAAAAA TAAAA-A TAAAAA TAAAA
401003 GGAGAATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
6 22 0.81
7 5 0.19
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
TAAAAA
Found at i:406538 original size:31 final size:29
Alignment explanation
Indices: 406470--406538 Score: 75
Period size: 31 Copynumber: 2.3 Consensus size: 29
406460 ACGATAAAAT
*** *
406470 AAGTGACTAAAATATAATGTTTCAAACAT
1 AAGTGACTAAAATATAATGAGACAAACAA
*
406499 AAGAGACTAAAATATAATATGAGACAAACAA
1 AAGTGACTAAAATAT-A-ATGAGACAAACAA
406530 AAGTGACTA
1 AAGTGACTA
406539 TTTTTATAGT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 14 0.44
30 1 0.03
31 17 0.53
ACGTcount: A:0.54, C:0.10, G:0.13, T:0.23
Consensus pattern (29 bp):
AAGTGACTAAAATATAATGAGACAAACAA
Found at i:409612 original size:23 final size:23
Alignment explanation
Indices: 409586--409638 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
409576 AATTTTATCT
409586 TTACTAATTT-AATTTTTTTAATA
1 TTACTAATTTAAATTTTTTT-ATA
*
409609 TTACTATTTTAAATTTTTTTATA
1 TTACTAATTTAAATTTTTTTATA
*
409632 TAACTAA
1 TTACTAA
409639 ATAAAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 17 0.65
24 9 0.35
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (23 bp):
TTACTAATTTAAATTTTTTTATA
Found at i:426396 original size:31 final size:31
Alignment explanation
Indices: 426360--426426 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
426350 TTTTTTAGTT
* * *
426360 AAATTTGGTCCTCAACCTTTTAAAAAGAGTC
1 AAATTTGATCATCAACCTTTCAAAAAGAGTC
* *
426391 GAATTTGATCATCAACCTTTCAAAAGGAGTC
1 AAATTTGATCATCAACCTTTCAAAAAGAGTC
426422 AAATT
1 AAATT
426427 GTTGTGTTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.31
Consensus pattern (31 bp):
AAATTTGATCATCAACCTTTCAAAAAGAGTC
Found at i:432812 original size:27 final size:26
Alignment explanation
Indices: 432769--432829 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
432759 TATCCATGTT
432769 TCATATA-ATCCCTTCTCATCA-TATA
1 TCATATATATCCCTTCTCA-CACTATA
*
432794 TCATATATATCTCTCTCTCACACTATA
1 TCATATATATCCCT-TCTCACACTATA
432821 T-ATATATAT
1 TCATATATAT
432830 ATAGGTTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
25 7 0.22
26 15 0.47
27 10 0.31
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.43
Consensus pattern (26 bp):
TCATATATATCCCTTCTCACACTATA
Found at i:433424 original size:16 final size:16
Alignment explanation
Indices: 433384--433449 Score: 51
Period size: 16 Copynumber: 4.1 Consensus size: 16
433374 AAATAAACAC
* *
433384 ATTTAAAATTATCTGA
1 ATTTAAAATAATCTAA
* * *
433400 ACTTGAAATGATCTAA
1 ATTTAAAATAATCTAA
*
433416 ATTTAAAATAATGTAA
1 ATTTAAAATAATCTAA
* *
433432 ATCTAAAAATAATTTAA
1 AT-TTAAAATAATCTAA
433449 A
1 A
433450 CCCAAATTAA
Statistics
Matches: 39, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
16 26 0.67
17 13 0.33
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTTAAAATAATCTAA
Found at i:434813 original size:30 final size:31
Alignment explanation
Indices: 434753--434831 Score: 103
Period size: 30 Copynumber: 2.6 Consensus size: 31
434743 TAGTCAATAT
434753 TTAAATAAAAAAC--TT-AATAGCTCAATGAC
1 TTAAAT-AAAAACTTTTGAATAGCTCAATGAC
*
434782 TTAAATAAAAACTTTTGAATAGTTC-ATGAC
1 TTAAATAAAAACTTTTGAATAGCTCAATGAC
*
434812 TTAAATGAAAACTTTTGAAT
1 TTAAATAAAAACTTTTGAAT
434832 TATGTGATCA
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
28 6 0.13
29 6 0.13
30 26 0.58
31 7 0.16
ACGTcount: A:0.47, C:0.10, G:0.09, T:0.34
Consensus pattern (31 bp):
TTAAATAAAAACTTTTGAATAGCTCAATGAC
Found at i:449053 original size:25 final size:24
Alignment explanation
Indices: 449020--449067 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
449010 AAGTATCATT
*
449020 ATAATAATATTAATTATAATTTTAA
1 ATAAAAATATT-ATTATAATTTTAA
*
449045 ATAAAAATATTTTTATAATTTTA
1 ATAAAAATATTATTATAATTTTA
449068 TAACTGAGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
ATAAAAATATTATTATAATTTTAA
Found at i:457243 original size:3 final size:3
Alignment explanation
Indices: 457235--457290 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
457225 TGTATTATAT
457235 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
457283 TTA TTA TT
1 TTA TTA TT
457291 CAAATCCAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Done.