genome.fa.s9760.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009760.1 Kokia drynarioides strain JFW-HI SEQ_124479, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  195778

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7678--7715	16	2.4	16	86	0	58	36	0	28	34	1.58
7877--7990	58	2.0	58	84	10	153	53	0	0	45	1.06
11375--11427	26	2.0	28	85	7	74	50	0	5	43	1.25
13437--13470	17	1.9	18	94	5	61	29	0	26	44	1.55
21864--21924	19	3.3	18	73	24	63	16	6	21	55	1.63
32646--32693	17	2.8	17	80	0	60	50	12	16	20	1.78
32644--32701	17	3.4	17	72	9	55	48	10	22	18	1.78
33143--33177	12	2.9	12	86	0	52	2	28	0	68	1.04
43565--43613	20	2.4	21	86	3	64	79	0	20	0	0.73
43563--43613	10	4.7	11	79	9	52	78	0	21	0	0.75
43572--43613	23	1.9	21	85	9	57	78	0	21	0	0.75
44342--44399	23	2.5	23	82	0	71	27	24	22	25	2.00
52926--52998	31	2.4	31	84	9	96	32	17	8	41	1.79
53241--53268	6	4.7	6	100	0	56	32	0	17	50	1.47
58347--58403	30	1.9	30	85	0	78	29	35	24	10	1.89
58448--58507	27	2.2	27	85	5	77	26	15	28	30	1.96
58940--58993	26	2.1	26	92	0	90	31	0	11	57	1.34
58989--59022	14	2.4	14	85	0	50	29	0	26	44	1.55
59074--59131	23	2.5	23	85	0	80	55	27	0	17	1.42
59074--59131	8	7.5	8	80	7	57	55	27	0	17	1.42
59074--59131	15	3.8	15	77	11	55	55	27	0	17	1.42
59515--59570	26	2.1	27	93	3	96	60	7	1	30	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59614--59680	22	3.1	22	80	6	66	22	1	29	46	1.61
59719--59777	28	2.1	28	83	0	73	52	27	0	20	1.47
59768--59900	26	5.0	26	83	7	169	55	11	0	32	1.41
62680--62726	20	2.3	21	85	7	69	29	19	4	46	1.68
65713--65738	6	4.3	6	100	0	52	0	30	0	69	0.89
65984--66126	20	7.2	21	78	14	144	4	6	20	68	1.30
65993--66126	39	3.4	38	81	8	155	5	6	19	68	1.32
65984--66132	58	2.6	56	89	6	208	5	6	20	68	1.31
66122--66190	12	5.8	12	79	6	79	5	1	18	73	1.10
66122--66190	24	2.9	24	87	6	97	5	1	18	73	1.10
66142--66176	6	5.8	6	86	0	52	2	0	17	80	0.84
66122--66202	24	3.5	22	83	11	83	7	1	18	72	1.14
66625--66660	5	7.0	5	87	6	54	22	55	19	2	1.56
67004--67039	7	5.1	7	100	0	72	0	13	16	69	1.19
71898--71969	30	2.4	30	100	0	144	26	9	25	38	1.86
72533--72577	22	2.0	22	100	0	90	42	8	8	40	1.67
73002--73052	21	2.3	21	80	10	57	43	27	9	19	1.82
73654--73759	41	2.5	44	80	10	121	20	26	11	41	1.86
77478--77681	23	8.8	23	84	2	248	37	4	12	45	1.63
77478--77681	69	2.9	69	88	2	284	37	4	12	45	1.63
77754--77858	36	2.9	36	78	10	124	24	12	23	39	1.89
79690--79726	2	18.5	2	100	0	74	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85958--86063	40	2.7	40	100	0	212	23	27	18	30	1.98
99460--99516	21	2.5	23	80	8	73	38	26	12	22	1.89
109675--109720	18	2.6	18	82	0	56	17	13	26	43	1.85
113095--113124	15	2.0	15	93	0	51	83	0	13	3	0.77
115140--115169	16	1.9	15	93	6	51	0	16	0	83	0.65
121811--121863	3	17.3	3	81	11	63	28	0	3	67	1.07
123315--123377	21	3.0	21	97	0	117	23	19	26	30	1.98
128337--128631	108	2.8	106	83	3	346	38	18	10	31	1.85
137947--137990	16	2.7	16	86	10	54	18	9	2	70	1.24
163493--163558	3	22.0	3	96	0	123	31	0	34	33	1.58
164524--164569	21	2.1	21	84	8	56	41	8	4	45	1.55
165461--165552	20	4.4	20	76	8	85	9	4	17	68	1.34
165542--165575	12	2.8	12	90	0	50	11	2	11	73	1.20
171212--171248	19	1.9	19	88	0	56	32	5	2	59	1.34
173088--173117	14	2.1	15	93	6	53	46	0	0	53	1.00
173036--173354	130	2.4	137	81	4	366	22	14	11	52	1.73
174243--174278	18	1.9	19	94	5	65	44	0	0	55	0.99
192258--192310	21	2.5	21	74	17	56	66	22	0	11	1.24
193614--193647	9	3.8	9	84	0	50	38	5	11	44	1.65
193612--193647	18	2.0	18	94	0	63	36	5	11	47	1.63
193865--193945	42	1.9	42	87	0	117	39	8	27	24	1.84

Tables:   1

The End!