genome.fa.s9763.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009763.1 Kokia drynarioides strain JFW-HI SEQ_124482, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130903

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4664--4717	25	2.2	25	90	3	83	35	20	3	40	1.70
5666--5690	10	2.5	10	100	0	50	8	0	80	12	0.92
9843--9996	27	5.7	27	78	9	120	33	12	25	28	1.93
12177--12277	36	2.8	36	93	0	175	34	16	26	21	1.95
14254--14434	51	3.5	51	90	1	274	29	13	23	33	1.93
21408--21513	26	4.1	26	74	4	106	25	15	24	34	1.94
25593--25693	36	2.8	36	95	0	175	33	15	27	22	1.95
33640--33714	37	2.0	37	92	0	123	46	13	16	24	1.82
36144--36174	16	1.9	16	93	0	53	61	0	16	22	1.34
37089--37159	38	1.9	36	85	5	97	19	14	30	35	1.91
40253--40282	12	2.5	12	94	0	51	56	0	43	0	0.99
45866--45896	16	1.9	16	93	0	53	22	16	0	61	1.34
64392--64436	20	2.2	20	84	7	56	13	20	35	31	1.91
67131--67168	19	2.0	20	84	5	51	18	2	13	65	1.37
68776--68820	21	2.1	21	83	4	54	42	24	11	22	1.86
71426--71464	19	2.1	19	95	0	69	23	23	20	33	1.97
72213--72237	9	2.8	9	100	0	50	92	0	0	8	0.40
73729--73785	30	1.9	30	88	0	87	38	10	5	45	1.61
73769--73910	30	4.8	30	81	6	155	37	25	1	35	1.65
73769--73910	59	2.4	60	82	9	177	37	25	1	35	1.65
86752--86780	15	1.9	15	100	0	58	65	0	34	0	0.93
88384--88436	26	2.0	26	100	0	106	43	15	15	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92890--93331	203	2.1	206	87	2	629	39	18	20	21	1.92
94549--94573	12	2.1	12	100	0	50	40	8	8	44	1.63
95292--95720	30	14.5	29	79	9	327	37	24	2	36	1.68
95292--95720	89	4.8	89	81	8	387	37	24	2	36	1.68
95334--95720	119	3.3	119	80	7	321	37	24	1	36	1.65
102470--102511	22	1.9	22	90	0	66	28	0	11	59	1.33
106669--107128	229	2.0	228	98	0	893	37	11	12	38	1.80
107917--108540	314	2.0	314	87	0	899	31	19	20	28	1.97
115508--115566	29	2.0	29	96	0	109	42	18	13	25	1.87

Tables:   1

The End!