Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009766.1 Kokia drynarioides strain JFW-HI SEQ_124486, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 970

Length: 1617
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36


Found at i:535 original size:139 final size:139

Alignment explanation


    Indices: 301--691  Score: 607
    Period size: 139  Copynumber: 2.9  Consensus size: 139

        291 CGTGGGCTGG

                                *                *  **  **             *     
        301 GTTT-GGTCTTCTTCTTAGTATCTCATCAGGAAGATGGTCAAATTGCTGTTTCAATCCGCTTCTC
          1 GTTTGGGTCTTCTTCTTAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCAATCCGTTTCTC

                                                  *                          
        365 TG----T-ATCAGGAAGATGAATTTGGTTCACTTCTCAATACCTCATCTGGAAGATTTGCTCGTT
         66 TGTATCTCATCAGGAAGATGAATTTGGTTCACTTCTCAGTACCTCATCTGGAAGATTTGCTCGTT

                     
        425 TCGAGCCTC
        131 TCGAGCCTC

                                                                             
        434 GTTTGGGTCTTCTTCTTAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCAATCCGTTTCTC
          1 GTTTGGGTCTTCTTCTTAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCAATCCGTTTCTC

                                                                             
        499 TGTATCTCATCAGGAAGATGAATTTGGTTCACTTCTCAGTATCC-CATCTGGAAGATTTGCTCGT
         66 TGTATCTCATCAGGAAGATGAATTTGGTTCACTTCTCAGTA-CCTCATCTGGAAGATTTGCTCGT

                      
        563 TTCGAGCCTC
        130 TTCGAGCCTC

                            *                                       *        
        573 GTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCAATTCGTTTCTC
          1 GTTTGGGTCTTCTTCTTAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCAATCCGTTTCTC

                              *                      *      *     
        638 TGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAG
         66 TGTATCTCATCAGGAAGATGAATTTGGTTCACTTCTCAGTACCTCATCTGGAAG

        692 CTAACAGTTT


Statistics
Matches: 237,  Mismatches: 13, Indels: 10
        0.91            0.05        0.04

Matches are distributed among these distances:
 133    4  0.02
 134   55  0.23
 138    2  0.01
 139  174  0.73
 140    2  0.01

ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37


Consensus pattern (139 bp):   
GTTTGGGTCTTCTTCTTAGTGTCTCATCAGGAAGATGATCCCATCACTGTTTCAATCCGTTTCTC
TGTATCTCATCAGGAAGATGAATTTGGTTCACTTCTCAGTACCTCATCTGGAAGATTTGCTCGTT
TCGAGCCTC
Done.