Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009771.1 Kokia drynarioides strain JFW-HI SEQ_124492, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1989
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29


Found at i:300 original size:45 final size:45

Alignment explanation


    Indices: 238--374  Score: 195
    Period size: 45  Copynumber: 3.0  Consensus size: 45

        228 GCATAGCTCA

                                                       * 
        238 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATGC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

                                   *                     
        283 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

                 **               *              *   *    
        328 TCAAGGGAAGGATATCATG-CTGAGTTTGACGAGCCATCGCGATAC
          1 TCAAGCCAAGGATATCA-GCCTCAGTTTGACGAGCCACCGCAATAC

              
        373 TC
          1 TC

        375 TATTCCTCCG


Statistics
Matches: 83,  Mismatches: 8, Indels: 2
        0.89            0.09        0.02

Matches are distributed among these distances:
  45   82  0.99
  46    1  0.01

ACGTcount: A:0.30, C:0.28, G:0.23, T:0.20


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
Done.