Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009772.1 Kokia drynarioides strain JFW-HI SEQ_124493, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8204
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Found at i:8167 original size:70 final size:71

Alignment explanation


    Indices: 8046--8204  Score: 239
    Period size: 70  Copynumber: 2.3  Consensus size: 71

       8036 TTGGTCAAAT

                                           *        *   * *                  
       8046 TTGGCTACTGACTTGAGTTGTTTCAAAACAATTCAAGGAAGTATTGGTAGAAGTTAAGG-GAAAG
          1 TTGGCTACTGACTTGAGTTGTTTCAAAACAACTCAAGGAAATATCGATAGAAGTTAAGGAGAAAG

                  
       8110 GTTACC
         66 GTTACC

                                    **                             *         
       8116 TTGGCTACTGACTTGAGTTGTTTCGGAACAACTCAAGGAAATATCGATAGAAGTTCAGGAGAAAG
          1 TTGGCTACTGACTTGAGTTGTTTCAAAACAACTCAAGGAAATATCGATAGAAGTTAAGGAGAAAG

                  
       8181 GTTACC
         66 GTTACC

                     *        
       8187 TTGGCTACTAACTTGAGT
          1 TTGGCTACTGACTTGAGT


Statistics
Matches: 80,  Mismatches: 8, Indels: 1
        0.90            0.09        0.01

Matches are distributed among these distances:
  70   52  0.65
  71   28  0.35

ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30


Consensus pattern (71 bp):   
TTGGCTACTGACTTGAGTTGTTTCAAAACAACTCAAGGAAATATCGATAGAAGTTAAGGAGAAAG
GTTACC
Done.