Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009776.1 Kokia drynarioides strain JFW-HI SEQ_124497, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7098
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29


Found at i:1037 original size:30 final size:30

Alignment explanation


    Indices: 1001--1065  Score: 94
    Period size: 30  Copynumber: 2.2  Consensus size: 30

        991 CAACTTAATA

                    *          *          
       1001 AACAAATGTCTCAAAAATAGTAACAAAATT
          1 AACAAATGCCTCAAAAATAATAACAAAATT

                        *             *   
       1031 AACAAATGCCTCTAAAATAATAACAAGATT
          1 AACAAATGCCTCAAAAATAATAACAAAATT

                 
       1061 AACAA
          1 AACAA

       1066 TAAAATAAGT


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  30   31  1.00

ACGTcount: A:0.57, C:0.15, G:0.06, T:0.22


Consensus pattern (30 bp):   
AACAAATGCCTCAAAAATAATAACAAAATT
Done.