Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009780.1 Kokia drynarioides strain JFW-HI SEQ_124501, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 650

Length: 1084
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29


Found at i:77 original size:45 final size:45

Alignment explanation


    Indices: 1--101  Score: 123
    Period size: 45  Copynumber: 2.2  Consensus size: 45

                              *                   *      
          1 TTGACGAGCCACCGCAATGCTCAAGCCAAGGATATCAGCCTCAAT
          1 TTGACGAGCCACCGCAATACTCAAGCCAAGGATATCAGACTCAAT

                                      **            * * * 
         46 TTGACGAGCCACCGCAATACT-ATAGGGAAGGATATCAGATTGAGT
          1 TTGACGAGCCACCGCAATACTCA-AGCCAAGGATATCAGACTCAAT

                       
         91 TTGACGAGCCA
          1 TTGACGAGCCA

        102 TCGCGATAAT


Statistics
Matches: 48,  Mismatches: 7, Indels: 2
        0.84            0.12        0.04

Matches are distributed among these distances:
  44    1  0.02
  45   47  0.98

ACGTcount: A:0.32, C:0.25, G:0.24, T:0.20


Consensus pattern (45 bp):   
TTGACGAGCCACCGCAATACTCAAGCCAAGGATATCAGACTCAAT
Done.