Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009781.1 Kokia drynarioides strain JFW-HI SEQ_124502, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77678
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 44 characters in sequence are not A, C, G, or T
Found at i:5230 original size:6 final size:6
Alignment explanation
Indices: 5221--5251 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
5211 ACAAACGCAA
5221 ATACAT ATACAT ATACAT ATACAT ATACAT A
1 ATACAT ATACAT ATACAT ATACAT ATACAT A
5252 GTAGACTCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (6 bp):
ATACAT
Found at i:12797 original size:30 final size:30
Alignment explanation
Indices: 12763--12819 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
12753 TAAAAATAAA
* *
12763 ATTTTTAAATGATTAAATTAAAATTTTATC
1 ATTTTTAAATGATCAAAGTAAAATTTTATC
*
12793 ATTTTTAAATGATCAAAGTATAATTTT
1 ATTTTTAAATGATCAAAGTAAAATTTT
12820 TTTTTACTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.49
Consensus pattern (30 bp):
ATTTTTAAATGATCAAAGTAAAATTTTATC
Found at i:17705 original size:20 final size:19
Alignment explanation
Indices: 17680--17794 Score: 122
Period size: 20 Copynumber: 5.8 Consensus size: 19
17670 TGATAGTTGT
*
17680 TGTTTGCACTTCGATGCTCC
1 TGTTTGCACTTCGGTG-TCC
* * * *
17700 TGTTTGTATTTTGGTGCCC
1 TGTTTGCACTTCGGTGTCC
*
17719 TCATTTGCACTTCGGTGTCC
1 T-GTTTGCACTTCGGTGTCC
17739 TTGTTTGCACTTCGGTGTCCC
1 -TGTTTGCACTTCGGTGT-CC
17760 TGTTTGCACTTCGGTGTCC
1 TGTTTGCACTTCGGTGTCC
*
17779 TTGTTAGCACTTCGGT
1 -TGTTTGCACTTCGGT
17795 TCAACTGCTA
Statistics
Matches: 79, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
19 5 0.06
20 71 0.90
21 3 0.04
ACGTcount: A:0.08, C:0.25, G:0.23, T:0.43
Consensus pattern (19 bp):
TGTTTGCACTTCGGTGTCC
Found at i:17744 original size:40 final size:40
Alignment explanation
Indices: 17682--17794 Score: 140
Period size: 40 Copynumber: 2.8 Consensus size: 40
17672 ATAGTTGTTG
* * * *
17682 TTTGCACTTCGATGCTCC-TGTTTGTATTTTGGTG-CCCTCA
1 TTTGCACTTCGGTG-TCCTTGTTTGCACTTCGGTGTCCCT-A
*
17722 TTTGCACTTCGGTGTCCTTGTTTGCACTTCGGTGTCCCTG
1 TTTGCACTTCGGTGTCCTTGTTTGCACTTCGGTGTCCCTA
*
17762 TTTGCACTTCGGTGTCCTTGTTAGCACTTCGGT
1 TTTGCACTTCGGTGTCCTTGTTTGCACTTCGGT
17795 TCAACTGCTA
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.05
40 58 0.89
41 4 0.06
ACGTcount: A:0.08, C:0.26, G:0.23, T:0.43
Consensus pattern (40 bp):
TTTGCACTTCGGTGTCCTTGTTTGCACTTCGGTGTCCCTA
Found at i:17789 original size:60 final size:60
Alignment explanation
Indices: 17679--17794 Score: 144
Period size: 60 Copynumber: 1.9 Consensus size: 60
17669 GTGATAGTTG
* * * *
17679 TTGTTTGCACTTCGATGCTCCTGTTTGTATTTTGGTGCCCTCATTTGCACTTCGGTGTCC
1 TTGTTTGCACTTCGATGCTCCTGTTTGCACTTCGGTGCCCTCATTAGCACTTCGGTGTCC
* * **
17739 TTGTTTGCACTTCGGTG-TCCCTGTTTGCACTTCGGTGTCCTTGTTAGCACTTCGGT
1 TTGTTTGCACTTCGATGCT-CCTGTTTGCACTTCGGTGCCCTCATTAGCACTTCGGT
17795 TCAACTGCTA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
59 1 0.02
60 46 0.98
ACGTcount: A:0.08, C:0.25, G:0.23, T:0.44
Consensus pattern (60 bp):
TTGTTTGCACTTCGATGCTCCTGTTTGCACTTCGGTGCCCTCATTAGCACTTCGGTGTCC
Found at i:24316 original size:26 final size:26
Alignment explanation
Indices: 24280--24333 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
24270 AAAAATTCCT
24280 ACCTACTACAGCAGGTAAACACAAAA
1 ACCTACTACAGCAGGTAAACACAAAA
24306 ACCTACTACAGCAGGTAAACACAAAA
1 ACCTACTACAGCAGGTAAACACAAAA
24332 AC
1 AC
24334 AAAAGTGATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.50, C:0.28, G:0.11, T:0.11
Consensus pattern (26 bp):
ACCTACTACAGCAGGTAAACACAAAA
Found at i:27409 original size:100 final size:101
Alignment explanation
Indices: 27294--27488 Score: 340
Period size: 102 Copynumber: 1.9 Consensus size: 101
27284 TGAAATTTAT
27294 ATATATTTTTGTTATATAAAATTATAAAAAAAAATT--AAAATATTTGTTGTATTACAAAAATAA
1 ATATATTTTTGTTATATAAAATTATAAAAAAAAATTCAAAAAT-TTTGTTGTATTACAAAAATAA
* *
27357 TAAGGTTTTAGTAATCTCAGTGAATTGAGATTTATAC
65 TAAGGTTTTAGTAATATCAATGAATTGAGATTTATAC
27394 ATATATTTTTGTTATATAAAATTATAAAAAAAAATTCCAAAAATTTTGTTGTATTACAAAAATAA
1 ATATATTTTTGTTATATAAAATTATAAAAAAAAATT-CAAAAATTTTGTTGTATTACAAAAATAA
27459 TAAGGTTTTAGTAATATCAATGAATTGAGA
65 TAAGGTTTTAGTAATATCAATGAATTGAGA
27489 CTTAGTTCAT
Statistics
Matches: 90, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
100 36 0.40
102 49 0.54
103 5 0.06
ACGTcount: A:0.46, C:0.04, G:0.10, T:0.40
Consensus pattern (101 bp):
ATATATTTTTGTTATATAAAATTATAAAAAAAAATTCAAAAATTTTGTTGTATTACAAAAATAAT
AAGGTTTTAGTAATATCAATGAATTGAGATTTATAC
Found at i:31293 original size:22 final size:23
Alignment explanation
Indices: 31265--31307 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
31255 CGGCCCAAGG
*
31265 ATAAAA-CAAACCAAAATAAAAA
1 ATAAAACCAAACAAAAATAAAAA
31287 ATAAAACCAAACAAAAATAAA
1 ATAAAACCAAACAAAAATAAA
31308 CAAAAGTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.77, C:0.14, G:0.00, T:0.09
Consensus pattern (23 bp):
ATAAAACCAAACAAAAATAAAAA
Found at i:34054 original size:23 final size:23
Alignment explanation
Indices: 34017--34060 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
34007 ATTAACATTA
* * *
34017 TTCGTGAATATGTTCGTTTAATG
1 TTCGTGAACACGTTCGATTAATG
34040 TTCGTGAACACGTTCGATTAA
1 TTCGTGAACACGTTCGATTAA
34061 GTTAAATGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41
Consensus pattern (23 bp):
TTCGTGAACACGTTCGATTAATG
Found at i:38710 original size:147 final size:147
Alignment explanation
Indices: 38443--38888 Score: 856
Period size: 147 Copynumber: 3.0 Consensus size: 147
38433 CAGGAGCATC
38443 TTGTTGACAAGGTGCCTCATATTCTTACTGTTTATGAAAAGAGAGCAGAGTAATTTTTATTTTCA
1 TTGTTGACAAGGTGCCTCATATTCTTACTGTTTATGAAAAGAGAGCAGAGTAATTTTTATTTTCA
*
38508 TTTTTTTCGAATAACTTTTGTGTTTCTTCTGACTATTCGCTTTTGTGCAATGCGTTCATTTTATA
66 TTTTTTTCGAAGAACTTTTGTGTTTCTTCTGACTATTCGCTTTTGTGCAATGCGTTCATTTTATA
38573 ACTAAATTCAAGCACTG
131 ACTAAATTCAAGCACTG
*
38590 TTGTTGACGAGGTGCCTCATATTCTTACTGTTTATGAAAAGAGAGCAGAGTAATTTTTATTTTCA
1 TTGTTGACAAGGTGCCTCATATTCTTACTGTTTATGAAAAGAGAGCAGAGTAATTTTTATTTTCA
* *
38655 TTTTTTTCGAAGAACTTTTGTGTTTCTTCTGACTATTCACTTTTGTGTAATGCGTTCATTTTATA
66 TTTTTTTCGAAGAACTTTTGTGTTTCTTCTGACTATTCGCTTTTGTGCAATGCGTTCATTTTATA
38720 ACTAAATTCAAGCACTG
131 ACTAAATTCAAGCACTG
38737 TTGTTGACAAGGTGCCTCATATTCTTACTGTTTATGAAAAGAGAGCAGAGTAATTTTTATTTTCA
1 TTGTTGACAAGGTGCCTCATATTCTTACTGTTTATGAAAAGAGAGCAGAGTAATTTTTATTTTCA
38802 TTTTTTTCGAAGAACTTTTGTGTTTCTTCTGACTATTCGCTTTTGTGCAATGCGTTCATTTTATA
66 TTTTTTTCGAAGAACTTTTGTGTTTCTTCTGACTATTCGCTTTTGTGCAATGCGTTCATTTTATA
38867 ACTAAATTCAAGCACTG
131 ACTAAATTCAAGCACTG
38884 TTGTT
1 TTGTT
38889 AACGGTTAAG
Statistics
Matches: 292, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
147 292 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.44
Consensus pattern (147 bp):
TTGTTGACAAGGTGCCTCATATTCTTACTGTTTATGAAAAGAGAGCAGAGTAATTTTTATTTTCA
TTTTTTTCGAAGAACTTTTGTGTTTCTTCTGACTATTCGCTTTTGTGCAATGCGTTCATTTTATA
ACTAAATTCAAGCACTG
Found at i:40948 original size:40 final size:40
Alignment explanation
Indices: 40902--40982 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
40892 ATGTCTTGTA
40902 ACTAGTCTGCTGATTATAGATGAATATCAAGTATTTCATT
1 ACTAGTCTGCTGATTATAGATGAATATCAAGTATTTCATT
40942 ACTAGTCTGCTGATTATAGATGAATATCAAGTATTTCATT
1 ACTAGTCTGCTGATTATAGATGAATATCAAGTATTTCATT
40982 A
1 A
40983 TCCTTGCATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (40 bp):
ACTAGTCTGCTGATTATAGATGAATATCAAGTATTTCATT
Found at i:48294 original size:9 final size:9
Alignment explanation
Indices: 48270--48301 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
48260 TATTTCAATT
48270 ATTAAATAA
1 ATTAAATAA
48279 A--AAATAA
1 ATTAAATAA
48286 ATTAAATAA
1 ATTAAATAA
48295 ATTAAAT
1 ATTAAAT
48302 TTTAAATATG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 7 0.33
9 14 0.67
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (9 bp):
ATTAAATAA
Found at i:59932 original size:12 final size:12
Alignment explanation
Indices: 59915--59941 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
59905 TGCTGCCACC
59915 TCTCTTGCTAGT
1 TCTCTTGCTAGT
59927 TCTCTTGCTAGT
1 TCTCTTGCTAGT
59939 TCT
1 TCT
59942 GTAGAAAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.26, G:0.15, T:0.52
Consensus pattern (12 bp):
TCTCTTGCTAGT
Found at i:61088 original size:6 final size:6
Alignment explanation
Indices: 61080--61126 Score: 76
Period size: 6 Copynumber: 7.8 Consensus size: 6
61070 AAATCTAAGA
* *
61080 GGGAGA GGGAGA GGGAGT GGGAGT GGGAGT GGGAGT GGGAGT GGGAG
1 GGGAGT GGGAGT GGGAGT GGGAGT GGGAGT GGGAGT GGGAGT GGGAG
61127 GAAGATTCCT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.21, C:0.00, G:0.68, T:0.11
Consensus pattern (6 bp):
GGGAGT
Found at i:62034 original size:60 final size:61
Alignment explanation
Indices: 61969--62087 Score: 177
Period size: 60 Copynumber: 2.0 Consensus size: 61
61959 ATCTTTTCAT
*
61969 TACCATTATTTTTAATCTTACCATCCATCC-GATAAACCCGCACTATAATAATATTTTAAC
1 TACCATTATTTTTAATCTTACCATCCATCCAAATAAACCCGCACTATAATAATATTTTAAC
* * * * *
62029 TACCATTATTTTTAATCTTCCCGTCCATCCAAATATATCTGCACTATAATAATATTTTA
1 TACCATTATTTTTAATCTTACCATCCATCCAAATAAACCCGCACTATAATAATATTTTA
62088 GCTTATAGTT
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
60 28 0.54
61 24 0.46
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (61 bp):
TACCATTATTTTTAATCTTACCATCCATCCAAATAAACCCGCACTATAATAATATTTTAAC
Found at i:67441 original size:25 final size:23
Alignment explanation
Indices: 67401--67446 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 23
67391 TTAAGTCTTT
*
67401 AAAAAATTAAAGAATATATTTTG
1 AAAAAATTAAAGAATAAATTTTG
67424 AAAAAATTAAATGAAATAAATTT
1 AAAAAATTAAA-G-AATAAATTT
67447 GTATCAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 11 0.55
24 1 0.05
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.33
Consensus pattern (23 bp):
AAAAAATTAAAGAATAAATTTTG
Found at i:67974 original size:366 final size:361
Alignment explanation
Indices: 67306--68032 Score: 1330
Period size: 366 Copynumber: 2.0 Consensus size: 361
67296 AATTTGGATA
67306 TTTTAACAAAAGATAATTAATTATTTTAATTCTTTGTGCTTTTAATTGTTTTTCTATTTTTTTAG
1 TTTTAACAAAAGATAATTAATTATTTTAATTCTTTGTGCTTTTAATTGTTTTTCTATTTTTTTAG
*
67371 TTTAGATAGAATTTATTTTTTTAAGTCTTTAAAAAATTAAAGAATATATTTTGAAAAAATTAAAT
66 TTTAGATAGAATTTATGTTTTTAAGTCTTTAAAAAATTAAAGAATATATTTTGAAAAAATTAAAT
67436 GAAATAAATTTGTATCAATTTAAAACTTCGATAGTTATATTGATTATTGTGAATGTTATAAAGTA
131 GAAATAAATTTGTATCAATTTAAAACTTCGATAGTTATATTGATTATTGTGAATGTTATAAAGTA
*
67501 TTATGCTAATTAAATTATTTTAACTTATTATGATTTTTTAAGGAAAATGGTATTTTCTTAAACCT
196 TTATGCTAATTAAATTATTTTAACTTATTATGATTTTTTAAGGAAAATGGTATTTTATTAAACCT
67566 GTCAAAATTTTTTTAATATTTTTTGTCAGATGATGAGGTTATTCACTGCTCTCTTTTTTTGACTT
261 GTCAAAATTTTTTTAATATTTTTTGTCAGATGATGAGGTTATTCACTGCTCTC-TTTTTTGACTT
67631 ATTTATTTTCCTTTTTTCTTATTATATATTTTCAGCT
325 ATTTATTTTCCTTTTTTCTTATTATATATTTTCAGCT
67668 TTTTAACAAAAGATAATTAATTATTTTAATTCTTTGTGCTTTTAATTGTTTTTCTATTTTTTTTA
1 TTTTAACAAAAGATAATTAATTATTTTAATTCTTTGTGCTTTTAATTGTTTTTCTA-TTTTTTTA
* *
67733 GTTTAGGTAGTATTTATGTTTTTAAGTCTTTAAAGAAATTAAAGAATATATTTTGAAAAAAAATT
65 GTTTAGATAGAATTTATGTTTTTAAGTCTTTAAA-AAATTAAAGAATATATTTTG--AAAAAATT
*
67798 AAATGAAATAAATTTGTATCAATTTAAAACTTCGATATTTATATTGATTATTGTGAATGTTATAA
127 AAATGAAATAAATTTGTATCAATTTAAAACTTCGATAGTTATATTGATTATTGTGAATGTTATAA
*
67863 AGTATTATGCTAATTAAATTATTTTAACTTATTATTATTTTTTAAGGAAAATGGTATTTTATTAA
192 AGTATTATGCTAATTAAATTATTTTAACTTATTATGATTTTTTAAGGAAAATGGTATTTTATTAA
67928 ACCTGTCAACAA-TTTTTTAATATTTTTTGTCAGATGATGAGGTTATTCACTGCTCTCTTTTTTG
257 ACCTGTCAA-AATTTTTTTAATATTTTTTGTCAGATGATGAGGTTATTCACTGCTCTCTTTTTTG
*
67992 ATTTATTTATTTTCCTTTTTTCTTATTATATATTTTCAGCT
321 ACTTATTTATTTTCCTTTTTTCTTATTATATATTTTCAGCT
68033 CTCTTCATTG
Statistics
Matches: 353, Mismatches: 7, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
362 56 0.16
363 39 0.11
364 20 0.06
365 47 0.13
366 189 0.54
367 2 0.01
ACGTcount: A:0.32, C:0.07, G:0.10, T:0.51
Consensus pattern (361 bp):
TTTTAACAAAAGATAATTAATTATTTTAATTCTTTGTGCTTTTAATTGTTTTTCTATTTTTTTAG
TTTAGATAGAATTTATGTTTTTAAGTCTTTAAAAAATTAAAGAATATATTTTGAAAAAATTAAAT
GAAATAAATTTGTATCAATTTAAAACTTCGATAGTTATATTGATTATTGTGAATGTTATAAAGTA
TTATGCTAATTAAATTATTTTAACTTATTATGATTTTTTAAGGAAAATGGTATTTTATTAAACCT
GTCAAAATTTTTTTAATATTTTTTGTCAGATGATGAGGTTATTCACTGCTCTCTTTTTTGACTTA
TTTATTTTCCTTTTTTCTTATTATATATTTTCAGCT
Found at i:68613 original size:28 final size:29
Alignment explanation
Indices: 68559--68628 Score: 70
Period size: 28 Copynumber: 2.4 Consensus size: 29
68549 TTTACATATT
* *
68559 TTTTTATAATTTTTAAAAGGTTAAA-TTA
1 TTTTTATCATTTTTAAAAGGATAAATTTA
* * *
68587 TTTTTATCATTTTTAGAGGGATCAATTTA
1 TTTTTATCATTTTTAAAAGGATAAATTTA
68616 TAATTTTATCATT
1 T--TTTTATCATT
68629 ATAATTTAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
28 20 0.59
29 4 0.12
31 10 0.29
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.54
Consensus pattern (29 bp):
TTTTTATCATTTTTAAAAGGATAAATTTA
Found at i:69504 original size:21 final size:21
Alignment explanation
Indices: 69480--69526 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
69470 AACTGAGCTA
* *
69480 AAAAAGAGCAAGAAAGACAAG
1 AAAAAGAGAAAGAAAGAAAAG
*
69501 AAAAAGCGAAAGAAAGAAAAG
1 AAAAAGAGAAAGAAAGAAAAG
*
69522 GAAAA
1 AAAAA
69527 CAACGAAGAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.70, C:0.06, G:0.23, T:0.00
Consensus pattern (21 bp):
AAAAAGAGAAAGAAAGAAAAG
Found at i:75030 original size:82 final size:82
Alignment explanation
Indices: 74893--75057 Score: 330
Period size: 82 Copynumber: 2.0 Consensus size: 82
74883 GATTTATTAG
74893 TGGAGCTACAATCTATTAGAAATGTGGGTTGTGCATGGGAAAAATGGTGATACAAATTGGGGGGG
1 TGGAGCTACAATCTATTAGAAATGTGGGTTGTGCATGGGAAAAATGGTGATACAAATTGGGGGGG
74958 TCAAATAGAGTAAATGC
66 TCAAATAGAGTAAATGC
74975 TGGAGCTACAATCTATTAGAAATGTGGGTTGTGCATGGGAAAAATGGTGATACAAATTGGGGGGG
1 TGGAGCTACAATCTATTAGAAATGTGGGTTGTGCATGGGAAAAATGGTGATACAAATTGGGGGGG
75040 TCAAATAGAGTAAATGC
66 TCAAATAGAGTAAATGC
75057 T
1 T
75058 ATCAGCGAGG
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 83 1.00
ACGTcount: A:0.34, C:0.08, G:0.32, T:0.26
Consensus pattern (82 bp):
TGGAGCTACAATCTATTAGAAATGTGGGTTGTGCATGGGAAAAATGGTGATACAAATTGGGGGGG
TCAAATAGAGTAAATGC
Done.