genome.fa.s9782.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009782.1 Kokia drynarioides strain JFW-HI SEQ_124503, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  166799

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4587--4797	84	2.5	83	83	3	242	20	17	40	21	1.91
29270--29424	80	1.9	80	89	0	238	43	9	16	30	1.79
30104--30162	19	3.2	18	76	13	66	66	3	3	27	1.24
30349--30451	9	10.8	9	72	18	68	33	0	1	63	1.12
30349--30453	10	10.7	10	73	15	60	34	0	1	62	1.12
30349--30460	19	5.8	20	76	16	87	33	0	1	63	1.11
30437--30489	7	7.4	7	81	10	63	37	0	0	62	0.96
31819--31987	23	7.6	23	77	14	147	42	20	24	12	1.87
31825--31902	39	2.0	39	89	0	120	39	21	24	14	1.90
31864--32003	23	6.1	22	80	9	120	40	20	26	13	1.89
39032--39773	49	15.2	49	70	10	408	37	18	25	18	1.93
39016--39725	98	7.3	98	83	2	854	37	18	25	18	1.93
41818--42173	30	12.0	30	81	4	389	36	23	1	39	1.65
41814--42159	60	5.8	60	85	4	443	36	23	1	39	1.64
41818--42159	89	3.8	89	82	5	397	36	22	1	39	1.63
41814--42172	119	3.0	117	83	7	431	35	23	1	38	1.65
43374--43445	24	3.0	24	91	0	117	26	9	8	55	1.60
45383--45433	24	2.1	24	85	0	66	25	9	9	54	1.63
51954--51985	17	1.9	17	93	6	57	0	12	0	87	0.54
66545--66589	21	2.1	21	100	0	90	28	8	13	48	1.72
70165--70193	13	2.1	14	93	6	51	31	0	20	48	1.50
70751--70865	59	1.9	59	91	3	187	30	12	19	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73252--73511	97	2.7	97	88	0	376	31	14	18	35	1.91
76116--76198	29	2.8	30	74	1	78	37	18	18	26	1.93
81737--81781	21	2.1	22	87	4	65	35	15	13	35	1.87
85450--85539	44	2.0	45	80	6	103	46	3	10	40	1.54
86987--87037	21	2.4	22	86	3	68	45	13	25	15	1.83
87647--87690	19	2.4	19	80	3	54	34	15	9	40	1.79
88871--88917	13	3.4	13	76	23	51	61	4	0	34	1.15
90465--91503	213	4.9	212	79	7	1126	28	15	21	34	1.94
95435--95474	21	1.9	21	89	0	62	5	10	60	25	1.49
99443--99485	20	2.0	22	82	8	54	2	25	4	67	1.22
100876--100987	56	2.0	55	96	1	206	36	16	11	34	1.86
112428--112455	2	14.0	2	100	0	56	50	0	0	50	1.00
124260--124304	22	2.0	22	82	0	54	15	11	31	42	1.82
127771--127821	24	2.1	25	82	7	61	68	1	1	27	1.11
128246--128289	22	2.0	23	86	4	63	20	2	2	75	1.03
128215--128289	14	5.4	14	73	10	64	22	4	2	70	1.16
130186--130235	13	3.8	13	86	7	66	42	2	2	54	1.23
130201--130235	7	5.1	7	93	6	63	42	0	0	57	0.99
132734--132853	61	2.0	61	96	0	222	22	8	29	40	1.83
137866--137911	24	1.9	25	86	8	69	54	6	4	34	1.46
138944--138990	12	3.7	13	83	13	62	2	14	4	78	0.99
138969--139016	21	2.5	19	84	15	64	4	10	4	81	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138936--139016	11	7.2	11	72	10	56	3	13	4	77	1.06
138969--139017	19	2.7	17	80	20	55	4	12	4	79	1.01
139941--139979	11	3.5	11	86	6	60	79	2	0	17	0.84
139942--139987	6	7.8	6	87	4	67	78	2	2	17	0.96
142042--142071	13	2.4	13	94	5	53	70	0	3	26	1.03
143166--143211	25	1.9	25	86	8	69	54	4	4	36	1.40
143277--143310	13	2.6	13	85	0	50	58	11	0	29	1.33
144317--144356	20	2.0	21	85	5	55	22	5	22	50	1.68
149256--149290	17	2.0	18	88	5	54	45	0	0	54	0.99
149570--149636	35	1.9	35	84	6	91	65	4	5	23	1.34
149569--149636	18	3.9	17	73	7	55	66	4	5	23	1.32
150169--150232	22	2.6	25	72	23	64	57	1	1	39	1.17
155819--155891	28	2.6	28	74	22	71	45	0	9	45	1.36
164833--164858	13	2.0	13	100	0	52	38	15	7	38	1.76
165232--165309	36	2.2	36	81	4	86	23	23	23	30	1.99
166184--166211	14	2.0	14	100	0	56	50	21	7	21	1.72

Tables:   1

The End!