genome.fa.s9790.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009790.1 Kokia drynarioides strain JFW-HI SEQ_124511, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116462

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1156--1278	25	5.2	23	79	11	76	13	28	18	39	1.88
1200--1278	25	3.2	25	91	3	117	15	25	17	41	1.88
1281--1331	23	2.2	23	82	0	66	13	21	15	49	1.79
4081--4121	20	2.0	20	85	4	55	48	17	7	26	1.73
9068--9109	20	2.0	20	86	4	57	47	16	7	28	1.73
26604--26651	17	2.7	17	80	6	51	47	0	0	52	1.00
27063--27098	6	6.2	6	90	6	56	80	0	19	0	0.71
27057--27105	11	4.4	11	84	5	62	77	0	22	0	0.77
29021--29090	21	3.2	20	75	15	68	55	1	2	40	1.23
29116--29153	14	2.5	15	87	8	51	47	2	5	44	1.39
42899--42998	31	3.3	30	80	9	78	43	15	14	28	1.85
42935--42995	31	2.0	31	87	6	88	40	16	13	29	1.86
45772--45814	19	2.2	20	87	8	61	44	0	0	55	0.99
49148--49206	30	2.0	30	100	0	118	49	13	16	20	1.80
49908--49941	2	17.5	2	93	6	61	50	0	0	50	1.00
52781--52841	30	2.0	30	84	6	79	55	0	18	26	1.42
52886--52935	16	3.2	16	66	11	50	38	0	40	22	1.54
53080--53126	21	2.2	22	84	3	60	55	0	19	25	1.43
64492--64552	28	2.1	29	79	11	72	26	11	27	34	1.91
64519--64775	58	4.4	57	77	10	191	36	6	24	31	1.81
64482--64669	29	6.5	29	64	18	77	38	8	22	30	1.84
64493--64670	28	6.2	28	65	19	71	37	8	23	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64666--64777	30	3.8	30	71	20	94	31	4	28	35	1.77
65780--65820	19	2.2	19	86	4	57	34	4	2	58	1.32
66868--67448	206	2.9	201	87	2	781	24	24	17	33	1.97
66868--67508	201	3.2	200	86	4	787	24	24	17	33	1.96
67571--67716	79	1.8	79	91	0	238	27	17	28	26	1.98
67571--67704	39	3.4	39	75	10	146	26	17	30	26	1.97
67998--68307	50	6.3	49	78	5	234	13	24	22	40	1.89
67959--68309	50	7.1	50	75	10	190	14	23	22	39	1.91
69526--69589	7	10.3	6	80	15	69	1	18	1	78	0.92
69526--69576	20	2.5	20	87	9	68	1	19	1	76	0.98
75354--75644	59	4.9	59	79	7	243	38	5	21	33	1.78
75393--75597	29	6.9	29	67	13	89	38	5	21	34	1.78
75395--75597	30	6.8	30	67	14	107	37	5	21	34	1.78
75356--75575	119	1.9	118	82	8	277	37	5	22	34	1.77
75498--75598	30	3.4	30	72	9	109	42	5	19	31	1.75
75524--75625	29	3.5	29	71	10	82	40	6	22	30	1.80
76885--77015	64	2.0	64	100	0	262	42	3	19	34	1.67
77807--77937	54	2.4	55	82	6	160	45	6	15	32	1.70
77809--77986	55	3.2	55	79	6	182	41	7	17	33	1.78
78322--78384	26	2.4	26	84	10	76	33	0	3	63	1.10
78417--78526	57	1.9	57	82	12	136	47	6	16	30	1.71
82006--82050	18	2.5	19	73	20	51	53	17	0	28	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90860--90928	36	1.9	36	90	0	111	33	11	13	42	1.80
92907--92949	11	3.9	11	78	0	50	6	2	11	79	1.02
92905--92946	22	1.9	22	90	0	66	7	2	14	76	1.10
109131--109158	2	14.0	2	100	0	56	50	0	0	50	1.00
109158--109188	2	15.5	2	100	0	62	51	0	48	0	1.00
110957--110986	12	2.4	13	94	5	53	30	0	0	70	0.88
112246--112303	29	2.0	29	100	0	116	37	0	20	41	1.53

Tables:   1

The End!