Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009800.1 Kokia drynarioides strain JFW-HI SEQ_124521, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3190
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.25

Warning! 89 characters in sequence are not A, C, G, or T


Found at i:2950 original size:43 final size:43

Alignment explanation


    Indices: 2882--3184  Score: 295
    Period size: 43  Copynumber: 7.0  Consensus size: 43

       2872 AGTTCTAAGT

                *        *                             
       2882 CGACTGTGTCCGAGGCTCCCGCACATCCGAGGCACCAAGGTGC
          1 CGACGGTGTCCGATGCTCCCGCACATCCGAGGCACCAAGGTGC

                              * *       *              
       2925 CGACGGTGTCCGATGCTCTCACACATCCAAGGCACCAAGGTGC
          1 CGACGGTGTCCGATGCTCCCGCACATCCGAGGCACCAAGGTGC

                              *  *                   * 
       2968 CGACGGTGTCCGATGCTCTCGTACATCCGAGGCACCAAGGTAC
          1 CGACGGTGTCCGATGCTCCCGCACATCCGAGGCACCAAGGTGC

                       *      *    *    *      **     *
       3011 CGACGGTGTCCAATGCTCACGCATATCCAAGGCACTGAGGTGT
          1 CGACGGTGTCCGATGCTCCCGCACATCCGAGGCACCAAGGTGC

                     *   *  *          *              *
       3054 CGACGGTGTTCGAGGCACCCGCACATCTGAGGCACCAAGGTGA
          1 CGACGGTGTCCGATGCTCCCGCACATCCGAGGCACCAAGGTGC

               ***       * * *       *                  
       3097 CGAAACTGTCCGAGGTTTCCGCACAACCTG-GGCACCAAGGTGC
          1 CGACGGTGTCCGATGCTCCCGCACATCC-GAGGCACCAAGGTGC

              **      *                           *     
       3140 CGGTGGTGTCTGA-GACTCCCGCACATCCGAGGCACCAGGGTGC
          1 CGACGGTGTCCGATG-CTCCCGCACATCCGAGGCACCAAGGTGC

              
       3183 CG
          1 CG

       3185 GTGATG


Statistics
Matches: 209,  Mismatches: 48, Indels: 6
        0.79            0.18        0.02

Matches are distributed among these distances:
  42    2  0.01
  43  206  0.99
  44    1  0.00

ACGTcount: A:0.21, C:0.33, G:0.30, T:0.17


Consensus pattern (43 bp):   
CGACGGTGTCCGATGCTCCCGCACATCCGAGGCACCAAGGTGC

Done.