genome.fa.s9808.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009808.1 Kokia drynarioides strain JFW-HI SEQ_124529, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  189053

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--27	2	13.5	2	100	0	54	48	0	0	51	1.00
9979--10227	123	2.0	123	97	0	471	34	14	23	26	1.94
17816--17852	18	2.1	18	90	10	58	18	13	0	67	1.23
17993--18024	12	2.7	12	90	0	55	34	0	0	65	0.93
18000--18050	22	2.3	22	83	12	61	33	1	1	62	1.17
19021--19114	13	7.1	13	77	7	73	36	15	3	44	1.63
19416--19903	45	10.8	45	75	7	146	21	18	18	41	1.90
19519--19852	90	3.7	90	89	0	481	22	17	19	40	1.91
19509--19807	135	2.2	135	84	1	366	23	17	18	40	1.91
19509--19852	135	2.5	135	81	0	346	22	18	19	40	1.91
19519--19897	90	4.2	88	80	11	351	22	17	18	41	1.90
25499--25573	17	4.4	17	82	0	96	41	1	5	52	1.33
26316--26382	3	22.0	3	81	3	80	62	2	1	32	1.19
27484--27540	30	1.9	30	85	0	78	35	21	5	38	1.76
27498--27603	30	3.6	29	80	11	117	33	18	2	44	1.65
27518--27723	30	7.0	28	73	14	139	32	24	2	40	1.70
27507--27723	59	3.7	59	83	2	224	31	24	3	40	1.71
27761--27821	28	2.2	28	82	2	70	32	31	11	24	1.91
29330--29429	45	2.2	45	83	5	130	32	20	24	24	1.98
32722--32779	19	3.1	18	70	9	53	37	0	1	60	1.07
33956--34053	43	2.3	43	89	3	144	33	12	12	41	1.80
37957--37985	15	1.9	15	100	0	58	24	13	6	55	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44509--44558	22	2.3	22	82	6	57	2	32	2	64	1.16
45337--45370	11	3.2	11	83	8	52	26	2	5	64	1.30
45368--45409	22	1.9	22	90	9	68	61	2	2	33	1.21
45372--45424	22	2.4	21	81	12	54	60	1	5	32	1.31
45499--45564	16	3.8	18	74	18	59	37	3	0	59	1.13
45542--45586	21	2.2	21	84	11	58	42	6	0	51	1.28
45795--45870	9	8.1	9	72	10	55	31	6	1	60	1.30
46049--46116	28	2.5	27	85	7	93	60	10	1	27	1.38
49719--49860	71	2.0	71	94	2	250	35	16	7	41	1.75
50037--50275	127	1.9	129	89	3	374	29	8	12	48	1.71
50161--50527	149	2.5	144	76	10	404	31	7	12	47	1.70
51033--51078	24	1.9	24	90	0	74	23	8	10	56	1.61
54124--54157	6	5.8	6	96	3	61	0	70	11	17	1.16
57566--57665	38	2.6	38	82	3	121	17	8	30	45	1.77
57877--57940	26	2.5	26	97	0	119	29	10	34	25	1.90
69422--69576	64	2.4	65	86	3	213	22	20	18	38	1.93
76305--76412	50	2.2	49	77	1	108	36	19	29	14	1.92
76383--76478	50	1.9	50	82	0	120	35	14	30	19	1.92
76404--76581	49	3.6	49	83	2	187	31	15	33	19	1.93
76245--76518	149	1.8	149	80	0	332	35	16	30	17	1.92
76443--76599	49	3.2	49	81	1	136	32	12	35	20	1.89
76684--76804	38	3.2	38	78	9	122	37	22	13	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78224--78292	25	2.7	26	82	8	79	21	11	2	63	1.40
79864--79938	36	2.1	36	94	0	132	13	28	20	38	1.90
85667--85730	12	5.3	12	84	0	83	68	20	3	7	1.28
85669--85730	24	2.6	24	92	0	97	67	20	3	8	1.31
85764--85828	22	2.9	22	76	10	78	72	16	3	7	1.21
85777--85845	22	3.0	22	77	8	68	72	18	2	5	1.18
86950--86986	10	3.8	10	85	7	58	37	0	2	59	1.12
86950--87008	19	3.1	19	92	0	91	32	0	5	62	1.17
86949--86999	9	5.4	9	79	9	57	33	0	3	62	1.13
87374--87737	187	2.0	179	89	4	548	32	10	16	40	1.83
88946--88992	25	1.9	23	87	12	67	23	6	14	55	1.63
95905--96168	87	3.0	87	97	0	510	39	12	28	20	1.88
103731--103885	77	2.0	78	96	1	285	36	12	7	43	1.72
104251--104280	14	2.2	13	94	5	51	63	3	0	33	1.11
105101--105165	33	2.0	33	88	8	98	52	10	10	26	1.69
105984--106034	5	10.2	5	91	0	84	21	35	19	23	1.96
105984--106034	20	2.5	20	100	0	102	21	35	19	23	1.96
115594--115663	24	2.9	24	100	0	140	45	21	12	20	1.84
118028--118066	14	2.8	14	92	0	60	20	0	35	43	1.52
118332--118422	45	2.0	45	87	4	130	20	19	27	31	1.97
118993--119082	43	2.1	43	87	4	128	48	7	8	34	1.63
120374--120422	16	3.2	16	75	21	59	30	0	6	63	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120417--120457	15	2.7	16	81	14	59	29	0	12	58	1.34
120417--120477	29	2.1	30	87	3	88	26	0	11	62	1.29
120640--120690	16	3.2	17	81	10	54	56	3	0	39	1.18
124959--125012	3	18.0	3	78	14	58	0	29	0	70	0.88
124959--125010	21	2.5	20	90	6	77	0	28	0	71	0.87
132188--132233	24	1.9	24	90	0	74	30	21	15	32	1.94
132843--133427	292	2.0	292	96	0	1082	32	14	12	39	1.84
135713--135761	23	2.1	22	85	14	64	53	0	0	46	1.00
137863--137929	35	1.9	35	87	6	100	23	1	2	71	1.08
141970--142008	10	3.8	10	80	6	51	71	0	7	20	1.10
142843--142882	21	2.0	20	85	5	53	70	15	5	10	1.32
142974--143046	22	3.5	21	75	18	80	69	19	2	8	1.26
142974--143045	21	3.4	21	81	5	83	69	19	2	8	1.27
143395--143420	2	13.0	2	100	0	52	50	0	0	50	1.00
143462--143745	148	1.9	151	81	5	351	48	7	2	41	1.44
144176--144233	30	1.9	31	85	3	82	27	18	12	41	1.86
144468--144571	31	3.5	31	73	15	101	47	7	18	26	1.75
144457--144628	59	2.9	59	86	2	204	50	8	15	25	1.71
144495--144588	28	3.2	28	71	19	93	47	6	19	26	1.73
151343--151378	12	3.0	12	92	8	56	16	16	16	50	1.79
151470--151533	24	2.7	23	87	2	83	25	14	17	43	1.86
151459--151564	12	8.9	12	66	16	51	33	14	15	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151470--151536	23	2.8	24	86	2	91	25	13	17	43	1.86
151932--151982	21	2.5	20	78	9	57	29	1	3	64	1.22
162629--162669	18	2.2	20	86	8	59	58	2	4	34	1.32
168678--168911	49	4.8	50	73	12	191	17	24	18	39	1.91
168655--168904	98	2.6	98	83	5	310	17	24	18	40	1.91
173023--173175	78	2.0	78	98	0	297	39	2	18	39	1.64
173044--173171	40	3.2	40	65	16	113	42	3	16	37	1.64
184134--184273	71	2.0	70	92	1	235	20	7	43	28	1.78

Tables:   1

The End!