Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000981.1 Kokia drynarioides strain JFW-HI SEQ_112171, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1667
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31

Warning! 4 characters in sequence are not A, C, G, or T


Found at i:1189 original size:45 final size:45

Alignment explanation


    Indices: 1071--1207  Score: 150
    Period size: 45  Copynumber: 3.0  Consensus size: 45

       1061 GCATAGCTCA

                                          * *            
       1071 TCAAGCCAAGGATATTAGCCTCAGTTTGACTAACCACCGCAATAC
          1 TCAAGCCAAGGATATTAGCCTCAGTTTGACGAGCCACCGCAATAC

                                   *          *    *     
       1116 TCAAGCCAAGGATATTAGCCTCAATTTGACGAGCTACCGTAATAC
          1 TCAAGCCAAGGATATTAGCCTCAGTTTGACGAGCCACCGCAATAC

                   *        *  *  *       *      *   *    
       1161 TCAATG-GAAGGATATCAGGCTGAGTTTGATGAGCCATCGCGATAC
          1 TCAA-GCCAAGGATATTAGCCTCAGTTTGACGAGCCACCGCAATAC

              
       1206 TC
          1 TC

       1208 TATTCCTCCC


Statistics
Matches: 76,  Mismatches: 15, Indels: 2
        0.82            0.16        0.02

Matches are distributed among these distances:
  45   75  0.99
  46    1  0.01

ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24


Consensus pattern (45 bp):   
TCAAGCCAAGGATATTAGCCTCAGTTTGACGAGCCACCGCAATAC
Done.