genome.fa.s9819.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009819.1 Kokia drynarioides strain JFW-HI SEQ_124540, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53490

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1419--1452	17	2.0	17	94	0	59	52	2	0	44	1.16
1690--1734	19	2.3	20	92	3	74	31	28	35	4	1.77
6543--6577	17	2.1	17	89	10	54	17	8	0	74	1.06
9634--9686	21	2.6	21	78	3	54	41	24	7	26	1.81
12721--12793	35	2.2	35	82	7	89	45	0	35	19	1.51
15568--15597	12	2.4	13	94	5	53	33	30	0	36	1.58
16397--16528	40	3.3	40	92	2	221	21	21	4	51	1.66
16623--16657	2	17.5	2	100	0	70	51	0	0	48	1.00
21768--21890	27	4.6	27	78	0	84	40	23	13	21	1.89
22515--22539	5	5.0	5	100	0	50	20	0	0	80	0.72
24259--24343	44	1.9	44	87	0	125	42	12	12	31	1.81
24871--24904	18	1.9	18	88	5	52	29	0	5	64	1.17
30946--30975	14	2.1	14	93	0	51	70	0	0	30	0.88
33102--33144	19	2.2	19	87	4	59	27	0	9	62	1.25
33520--33561	22	2.0	21	81	13	50	66	4	9	19	1.38
36294--36330	17	2.1	17	90	10	56	45	0	0	54	1.00
36263--36379	34	3.5	33	77	14	91	46	1	0	51	1.17
36339--36381	14	3.1	14	78	15	54	51	2	0	46	1.13
38049--38229	72	2.5	72	92	0	301	54	14	5	24	1.62
38658--38703	18	2.6	18	85	0	65	36	10	8	43	1.71
42896--42967	37	1.9	37	91	5	119	26	29	19	25	1.99
43933--43963	16	1.9	16	93	0	53	22	16	0	61	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45143--45369	127	1.8	125	87	3	339	34	15	22	27	1.94
46174--46395	58	3.8	58	80	3	228	49	8	19	22	1.74
46174--46395	29	7.5	29	78	4	183	49	8	19	22	1.74
46796--46867	33	2.2	33	85	7	94	37	2	15	44	1.61
47474--47524	23	2.2	23	79	6	59	35	7	5	50	1.55
51255--51380	37	3.4	37	91	0	198	29	12	25	32	1.93
51790--51834	24	1.9	24	86	4	65	42	11	4	42	1.60
52862--52926	22	2.9	22	86	2	76	40	18	24	16	1.91
52884--52926	23	1.9	22	90	4	68	41	18	25	13	1.88

Tables:   1

The End!