Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009829.1 Kokia drynarioides strain JFW-HI SEQ_124550, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3706
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39


Found at i:673 original size:16 final size:16

Alignment explanation


    Indices: 652--683  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

        642 CAGCTGCTTG

                            
        652 CCTCTGTTTATCCACT
          1 CCTCTGTTTATCCACT

                            
        668 CCTCTGTTTATCCACT
          1 CCTCTGTTTATCCACT

        684 TACTATTGGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.12, C:0.38, G:0.06, T:0.44


Consensus pattern (16 bp):   
CCTCTGTTTATCCACT

Found at i:1363 original size:20 final size:19

Alignment explanation


    Indices: 1335--1384  Score: 55
    Period size: 19  Copynumber: 2.6  Consensus size: 19

       1325 CCAGTTTCCC

                         *   *  
       1335 TTTTCTCTTTTTGTTGTGAT
          1 TTTTCTCTTTTT-ATGTCAT

                *              
       1355 TTTTGTCTTTTTATGTCAT
          1 TTTTCTCTTTTTATGTCAT

                *      
       1374 TTTTTTCTTTT
          1 TTTTCTCTTTT

       1385 CAAAATTTGA


Statistics
Matches: 26,  Mismatches: 4, Indels: 1
        0.84            0.13        0.03

Matches are distributed among these distances:
  19   15  0.58
  20   11  0.42

ACGTcount: A:0.06, C:0.10, G:0.10, T:0.74


Consensus pattern (19 bp):   
TTTTCTCTTTTTATGTCAT
Done.