Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009832.1 Kokia drynarioides strain JFW-HI SEQ_124553, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5114
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33


Found at i:975 original size:82 final size:82

Alignment explanation


    Indices: 838--997  Score: 320
    Period size: 82  Copynumber: 2.0  Consensus size: 82

        828 TTTGACAAAC

                                                                             
        838 AGTGAGCCATTTATCTTCCATTCCAAAGATATAAATATTTCCAATGCTAAAAGCACCAGTCCAGC
          1 AGTGAGCCATTTATCTTCCATTCCAAAGATATAAATATTTCCAATGCTAAAAGCACCAGTCCAGC

                             
        903 CTCTATCGAATCAACAT
         66 CTCTATCGAATCAACAT

                                                                             
        920 AGTGAGCCATTTATCTTCCATTCCAAAGATATAAATATTTCCAATGCTAAAAGCACCAGTCCAGC
          1 AGTGAGCCATTTATCTTCCATTCCAAAGATATAAATATTTCCAATGCTAAAAGCACCAGTCCAGC

                         
        985 CTCTATCGAATCA
         66 CTCTATCGAATCA

        998 GCATCGTTAG


Statistics
Matches: 78,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  82   78  1.00

ACGTcount: A:0.35, C:0.26, G:0.11, T:0.28


Consensus pattern (82 bp):   
AGTGAGCCATTTATCTTCCATTCCAAAGATATAAATATTTCCAATGCTAAAAGCACCAGTCCAGC
CTCTATCGAATCAACAT
Done.