Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009833.1 Kokia drynarioides strain JFW-HI SEQ_124554, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16636
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32


Found at i:6624 original size:10 final size:10

Alignment explanation


    Indices: 6582--6624  Score: 59
    Period size: 10  Copynumber: 4.2  Consensus size: 10

       6572 ATTTGTAAAT

                       
       6582 AATAATAAAAA
          1 AATAA-AAAAA

              *    *  
       6593 AAGAAAAGAA
          1 AATAAAAAAA

                      
       6603 AATAAAAAAA
          1 AATAAAAAAA

                      
       6613 AATAAAAAAA
          1 AATAAAAAAA

              
       6623 AA
          1 AA

       6625 ATTTTGAGTA


Statistics
Matches: 28,  Mismatches: 4, Indels: 1
        0.85            0.12        0.03

Matches are distributed among these distances:
  10   24  0.86
  11    4  0.14

ACGTcount: A:0.86, C:0.00, G:0.05, T:0.09


Consensus pattern (10 bp):   
AATAAAAAAA

Found at i:6625 original size:21 final size:21

Alignment explanation


    Indices: 6582--6626  Score: 56
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       6572 ATTTGTAAAT

                         *    *  
       6582 AATAATAAAAAAAGAAAAGAA
          1 AATAATAAAAAAAAAAAAAAA

                                  
       6603 AATAA-AAAAAAATAAAAAAAA
          1 AATAATAAAAAAA-AAAAAAAA

               
       6624 AAT
          1 AAT

       6627 TTTGAGTACG


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  20    7  0.33
  21   14  0.67

ACGTcount: A:0.84, C:0.00, G:0.04, T:0.11


Consensus pattern (21 bp):   
AATAATAAAAAAAAAAAAAAA
Done.