Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000984.1 Kokia drynarioides strain JFW-HI SEQ_112175, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1000
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34


Found at i:550 original size:37 final size:38

Alignment explanation


    Indices: 500--578  Score: 97
    Period size: 37  Copynumber: 2.1  Consensus size: 38

        490 TTCGAAGCAA

                             *        *           
        500 TAAAGTGACACCCAGTATCTCATC-AGCCTAGCCGAAG
          1 TAAAGTGACACCCAGTACCTCATCGAACCTAGCCGAAG

                   **                  *   *      
        537 TAAAGTGGTACCCAGTACCTCATCGAATCTATCCGAAG
          1 TAAAGTGACACCCAGTACCTCATCGAACCTAGCCGAAG

                
        575 TAAA
          1 TAAA

        579 ATAATGACAC


Statistics
Matches: 35,  Mismatches: 6, Indels: 1
        0.83            0.14        0.02

Matches are distributed among these distances:
  37   21  0.60
  38   14  0.40

ACGTcount: A:0.34, C:0.27, G:0.18, T:0.22


Consensus pattern (38 bp):   
TAAAGTGACACCCAGTACCTCATCGAACCTAGCCGAAG
Done.