Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009840.1 Kokia drynarioides strain JFW-HI SEQ_124563, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3448
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.28
Found at i:535 original size:216 final size:215
Alignment explanation
Indices: 1--3448 Score: 3783
Period size: 216 Copynumber: 16.1 Consensus size: 215
*** *
1 ACGTAAATAAGTTTTTAATTCAAACCCCAAAACTTGTTTACAAAATGACAAACCT-TTTAGACCA
1 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGA-AAA-CTATTTAGACCA
* * * * * * * * * *
65 AATTATGCGACTT-CCTGAGCGTGTAAAGTTCGGAAAATTACTCGAAGGATTGGATCG-CCTTGC
64 AATGATGAGATTTCCCT-CGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCC-TGA
* * * ** * *
128 ATACTTTAAGGAA-TCGAAGCTATAAAAGAACTCGTAAAAGTTCAACAAGTTTGAAAGTTCGTCC
127 ACACTTTAAGGAACTCGAATCTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
192 AAGAACCAAGAGAGCAACAATTCTC
192 AAGAACCAAGAGAG-AACAATTCTC
*
217 AC-TTAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACGAAAA-GAACAACTATTTAGACCA
1 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTAC-AAAATGAA-AACTATTTAGACCA
* * *
280 AATGATGTGATTTCCCTCGCATGTAATGTTCGAAAAATTACTCGAAGGAATAGATCGTCCTGAAC
64 AATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCCTGAAC
* *
345 ACTTTAAGGAACTAG-ATCTAAAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA
129 ACTTTAAGGAACTCGAATCTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA
*
409 GAACCAAGAGAGAAGTAATTCTC
194 GAACCAAGAGAGAA-CAATTCTC
* *
432 ACGTAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACAAAATTGAAAACTATTTAGACTAA
1 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAA-TGAAAACTATTTAGACCAA
* ** *
497 ATGATGAGATTTCCCTCGCATGGAATGTTCAAAAAATTACAAGAAGGAATGGATCGTCTTGAACA
65 ATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCCTGAACA
* * * *
562 CTTTAAGG-ATTCGAATTTAAAAAAGAACTCGTAAAAGTTT-----G-TC--AAGTTTGTCCAAC
130 CTTTAAGGAACTCGAATCTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAG
* *
618 AACAAAGAGAGAAACAAATCTC
195 AACCAAGAGAG-AACAATTCTC
* * * * *
640 ACGAAAATAAGTTTTTAATTCAAACACCAAAACTTGTTTACAAAATGACAAACCT-TTTAGGCCA
1 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGA-AAA-CTATTTAGACCA
* * * * * *
704 AATTAT-ACGACTT-CCTGCGCATGTAATGTTCGGAAAATTGCTCGAAGGATTGGATCG-CCTTG
64 AATGATGA-GATTTCCCT-CGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCC-TG
* * * * ** * *
766 CATACTTTAAGGAAC-CGAAGCTATAAAAGAACTCGTAAAAGTTCAACAAGTTTGAAAGTTCGTC
126 AACACTTTAAGGAACTCGAATCTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
830 CAAGAACCAAGAGAGCAACAATTCTC
191 CAAGAACCAAGAGAG-AACAATTCTC
*
856 AC-TTAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACGAAAA-GAAAAACTATTTAGACCA
1 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTAC-AAAATG-AAAACTATTTAGACCA
* * * *
919 AATGATGTGATTTCCCTCGCTTGGCATGTTCGAAAAATTACTCGAAGGAATAGATCGTCCTGAAC
64 AATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCCTGAAC
* * *
984 ACTTTAAGGAACT-GGATTTAAAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA
129 ACTTTAAGGAACTCGAATCTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA
*
1048 GAACCAAGAGAGAAGTAATTCTC
194 GAACCAAGAGAGAA-CAATTCTC
* * *
1071 ATGTAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACAAAATTGAAAACTATTTAGACTAA
1 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAA-TGAAAACTATTTAGACCAA
* *** * * *
1136 ATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATAACAATAAGGAACGGATCGTCTTGATCA
65 ATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCCTGAACA
* * * * * ** *
1201 ATTTAAGG-ATTCGAAT-TTAAAAAGAACTCGTAAAAATTTGTCAAGTTTTGAAGTTCGTCCAAC
130 CTTTAAGGAACTCGAATCTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAG
1264 AACCAAGAGAGAAACAATTCTC
195 AACCAAGAGAG-AACAATTCTC
* * ** * *
1286 ACGTAAATAAGGTTTTAATTCAATGGCCAAAACGTGTTTACAAAATGACAAACTTTTTAGACCAA
1 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGA-AAACTATTTAGACCAA
* * ** * * * *
1351 ATGATGTGACTTGCCGAC-CATGTAATGTTCGAAAAA-TAGTTCGAAGGATTGGATCGCCCTGAA
65 ATGATGAGA-TTTCCCTCGCATGGAATGTTCGAAAAATTA-CTCGAAGGAATGGATCGTCCTGAA
* * * * * *
1414 TACTTTAAGGAACT-GAAGCTATAAAAGAACTCGTAAAAGTTCT-ACAAGTTTGAAATTTCGTCC
128 CACTTTAAGGAACTCGAATCTAAAAAAGAACTCGTAAAAGTT-TGACAAGTTCGGAAGTTCGTCC
1477 AAGAACCAAGAGAGACACAATTCTC
192 AAGAACCAAGAGAGA-ACAATTCTC
* * * *
1502 GCGTAAATAAGTTCTTAATTCAAAGATCAAAACTTGTTTACGAAATGAAAAACTATTTAGACCAA
1 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATG-AAAACTATTTAGACCAA
* *
1567 ATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATAGATCGTCCTGAACA
65 ATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCCTGAACA
* * * * * * * *
1632 CTTTAAGGAATTGGAAT-TTAAAAAGAACTAGTAAAAGTTTGACAATTTCAGAAGTTTGTCCAAC
130 CTTTAAGGAACTCGAATCTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAG
1696 AACCAAGAGAGAACAATTCTC
195 AACCAAGAGAGAACAATTCTC
* * * *
1717 ACGT-AATAAGTTTTTAATTCAAACG-CCAAAACTTGTTTAAAAAATGACAAACCT-TTTAGATC
1 ACGTAAATAAGTTTTTAATTCAAA-GATCAAAACATGTTTACAAAATGA-AAA-CTATTTAGACC
* * * ** * * *
1779 AAATTATGCGACTT-CCT-GATCATGTCATGTTCGAAAAATTACTCAAAGGATTAGATCG-CCTT
63 AAATGATGAGATTTCCCTCG--CATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCC-T
* * * * ** ** *
1841 GCATACTTTAAGGAA-TCGAAGCTATAAAAGAACTCGTAAAAGTTCAACAAGTTCTAAAGTTTGT
125 GAACACTTTAAGGAACTCGAATCTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT
*
1905 CAAAGAACCAAGAGAGGAACAATTCTC
190 CCAAGAACCAAGAGA-GAACAATTCTC
* * *
1932 AC-TTAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACGAAAATAAAAATTATTTAGACCAA
1 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTAC-AAAATGAAAACTATTTAGACCAA
* * *
1996 ATGATGTGATTTCCCTTGCATGGAATGTTCGAAAAATTACTCGAAGGAATAGATCGTCCTGAACA
65 ATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCCTGAACA
* *
2061 CTTTAAGGAACT-GGATTTAAAAAAGAACT-GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAG
130 CTTTAAGGAACTCGAATCTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAG
*
2124 AACCAAGAGAGAAGTAATTCTC
195 AACCAAGAGAGAA-CAATTCTC
* * *
2146 ACGTAAATAAGATTATAATTCAAAGATCAAAACATG-TT------T---AACTATTTAGACTAAA
1 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAACTATTTAGACCAAA
** * * *
2201 TGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACAAGTAGGAATGGATCGTCTTGACCAC
66 TGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCCTGAACAC
* * * * *
2266 TTTAAGGATC-CGAATTTAAAAAAGAACTCGTAAAAGTTTGTCAAGTTTGGAAGTTCGTCCAACA
131 TTTAAGGAACTCGAATCTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
2330 ACCAAGAGAGAAACAATTCTC
196 ACCAAGAGAG-AACAATTCTC
* *
2351 ACGTAAATAAGTTTTTAATTCAAACG-CCAAAACTTGTTTACAAAATGAAAAACCT-TTTAGACC
1 ACGTAAATAAGTTTTTAATTCAAA-GATCAAAACATGTTTACAAAATG-AAAA-CTATTTAGACC
* * * * * * *
2414 AAATTAT-ACGACTT-CCTGAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGTTCG-CCTT
63 AAATGATGA-GATTTCCCT-CGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCC-T
* * * * * * ** * *
2476 GCATATTTTATGGAAC-CGAAGCTATAAAAGAACTCGTAAAAGTTCAACAAGTTCGAAAGTTCAT
125 GAACACTTTAAGGAACTCGAATCTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT
*
2540 CCAAGAACCAAGAGAGGAACAGTTCTC
190 CCAAGAACCAAGAGA-GAACAATTCTC
*
2567 AC-TTAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACGAAAA-GAACAACTATTTAGACCA
1 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTAC-AAAATGAA-AACTATTTAGACCA
* * *
2630 AATGATGTGATTTCCCTCGCATGTAATGTTCGAAAAATTACTCGAAGGAATAGATCGTCCTGAAC
64 AATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCCTGAAC
* *
2695 ACTTTAAGGAACTAG-ATCTAAAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA
129 ACTTTAAGGAACTCGAATCTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA
*
2759 GAACCAAGAGAGAAGTAATTCTC
194 GAACCAAGAGAGAA-CAATTCTC
* *
2782 ACGTAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACAAAATTGAAAACTATTTAGACTAA
1 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAA-TGAAAACTATTTAGACCAA
*** * *
2847 ATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACAATAAGGAATGGATCGTCTTGATCA
65 ATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCCTGAACA
* * * ** *
2912 CTTTAAGGATC-CGAATTTAAAAAAGAACTCGTAAAAGTTTGTCAAGTTTTGAAGTTCGTCCAAC
130 CTTTAAGGAACTCGAATCTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAG
*
2976 AACAAAGAGAGAAACAATTCTC
195 AACCAAGAGAG-AACAATTCTC
* * ** * *
2998 ACGTAAATAAGGTTTTAATTCAATGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAA
1 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGA-AAACTATTTAGACCAA
* * ** * * * *
3063 ATGATGTGACTTGCCGAC-CATGTAATGTTCGAAAAATT-GTACGAAGGATTGGATCGTCTTGAA
65 ATGATGAGA-TTTCCCTCGCATGGAATGTTCGAAAAATTACT-CGAAGGAATGGATCGTCCTGAA
* * * * *
3126 TACTTTAAGGAACT-GAAGT-TATAAAAGAACTCGTAAAAGTTCT-ACAAGTTTGAAATTTCGTC
128 CACTTTAAGGAACTCGAA-TCTAAAAAAGAACTCGTAAAAGTT-TGACAAGTTCGGAAGTTCGTC
3188 CAAGAACCAAGAGAGACACAATTCTC
191 CAAGAACCAAGAGAGA-ACAATTCTC
* *
3214 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACGAAATGAAAAACTATTTAGACCAA
1 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATG-AAAACTATTTAGACCAA
* *
3279 ATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATAGATCGTCCTGAACA
65 ATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCCTGAACA
** * * * * * *
3344 CTTTAAGGAACAAG-ATATAATAAAGAACTAGTAAAAGTTTGACAATTTCGGAAGTTTGTCCAAT
130 CTTTAAGGAACTCGAATCTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAG
3408 AACCAAGAGAGAAACAATTCTC
195 AACCAAGAGAG-AACAATTCTC
3430 ACGTAAATAAGTTTTTAAT
1 ACGTAAATAAGTTTTTAAT
Statistics
Matches: 2716, Mismatches: 399, Indels: 234
0.81 0.12 0.07
Matches are distributed among these distances:
204 96 0.04
205 79 0.03
206 5 0.00
207 9 0.00
208 156 0.06
209 5 0.00
210 2 0.00
211 1 0.00
212 2 0.00
213 14 0.01
214 227 0.08
215 867 0.32
216 1222 0.45
217 31 0.01
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.28
Consensus pattern (215 bp):
ACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAACTATTTAGACCAAA
TGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCCTGAACAC
TTTAAGGAACTCGAATCTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
ACCAAGAGAGAACAATTCTC
Found at i:1348 original size:431 final size:427
Alignment explanation
Indices: 1--3448 Score: 3815
Period size: 431 Copynumber: 8.0 Consensus size: 427
** *
1 ACGTAAATAAGTTTTTAATTCAAACCCCAAAACTTGTTTACAAAATGACAAACCT-TTTAGACCA
1 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAA-CTATTTAGACCA
* * * * * * * * *
65 AATTATGCGACTT-CCTGAGCGTGTAAAGTTCGGAAAATTACTCGAAGGATTGGATCG-CCTTGC
65 AATGATGTGATTTCCCT-CGCATGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCC-TGA
* * * *
128 ATACTTTAAGGAA-TCGAAGCTATAAAAGAACTCGTAAAAGTTCAACAAGTTTGAAAGTTCGTCC
128 ACACTTTAAGGAACT-GAAGCTAAAAAAGAACTCGTAAAAGTT-TACAAGTTCGAAAGTTCGTCC
*
192 AAGAACCAAGAGAGCAACAATTCTCAC-TTAATAAGTTTTTAATTCAAAGATCAAAACATGTTTA
191 AAGAACCAAGAGAG-AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTA
* *
256 CGAAAA-GAACAACTATTTAGACCAAATGATGTGATTTCCCTCGCATGTAATGTTCGAAAAATTA
255 C-AAAATGAA-AACTATTTAGACCAAATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTA
* * *
320 CTCGAAGGAATAGATCGTCCTGAACACTTTAAGGAACTAGATCTAAAAAAGAACTAGTAAAAGTT
318 CTCGAAGGAATAGATCGTCCTGAACACTTTAAGGAACGA-AT-TTAAAAAGAACTCGTAAAAGTT
* **
385 TGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAGTAATTCTC
381 TGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * *
432 ACGTAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACAAAATTGA-AAACTATTTAGACTA
1 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACATGTTTACAAAA-TGACAAACTATTTAGACCA
* * * ** *
496 AATGATGAGATTTCCCTCGCATGGAATGTTCAAAAAATTACAAGAAGGAATGGATCGTCTTGAAC
65 AATGATGTGATTTCCCTCGCATGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCCTGAAC
* ** * *
561 ACTTTAAGG-ATTCGAATTTAAAAAAGAACTCGTAAAAGTTT----G-TC--AAGTTTGTCCAAC
130 ACTTTAAGGAACT-GAAGCTAAAAAAGAACTCGTAAAAGTTTACAAGTTCGAAAGTTCGTCCAAG
* * * * * *
618 AACAAAGAGAGAAACAAATCTCACGAAAATAAGTTTTTAATTCAAACACCAAAACTTGTTTACAA
194 AACCAAGAGAG-AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAA
* * * * * *
683 AATGACAAACCT-TTTAGGCCAAATTAT-ACGACTT-CCTGCGCATGTAATGTTCGGAAAATTGC
258 AATGA-AAA-CTATTTAGACCAAATGATGA-GATTTCCCT-CGCATGGAATGTTCGAAAAATTAC
* * * * **
745 TCGAAGGATTGGATCG-CCTTGCATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTT
319 TCGAAGGAATAGATCGTCC-TGAACACTTTAAGGAA-CGAATTTA-AAAAGAACTCGTAAAAGTT
** * *
809 CAACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGCAACAATTCTC
381 TGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * *
856 AC-TTAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACGAAAA-GAAAAACTATTTAGACCA
1 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACATGTTTAC-AAAATGACAAACTATTTAGACCA
* ** *
919 AATGATGTGATTTCCCTCGCTTGGCATGTTCGAAAAATTACTCGAAGGAATAGATCGTCCTGAAC
65 AATGATGTGATTTCCCTCGCATGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCCTGAAC
* ** * *
984 ACTTTAAGGAACTGGATTTAAAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAG
130 ACTTTAAGGAACTGAAGCTAAAAAAGAACTCGTAAAAGTTT-ACAAGTTCGAAAGTTCGTCCAAG
* * *
1049 AACCAAGAGAGAAGTAATTCTCATGTAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACAA
194 AACCAAGAGAGAA-CAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAA
* * ***
1114 AATTGAAAACTATTTAGACTAAATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATAACAAT
258 AA-TGAAAACTATTTAGACCAAATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACTCG
** * * * * * *
1179 AAGGAACGGATCGTCTTGATCAATTTAAGGATTCGAATTTAAAAAGAACTCGTAAAAATTTGTCA
322 AAGGAATAGATCGTCCTGAACACTTTAAGGA-ACGAATTTAAAAAGAACTCGTAAAAGTTTGACA
* *
1244 AGTTTTGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTC
386 AGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * * *
1286 ACGTAAATAAGGTTTTAATTCAATGGCCAAAACGTGTTTACAAAATGACAAACTTTTTAGACCAA
1 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAA
* ** * * *
1351 ATGATGTGACTTGCCGAC-CATGTAATGTTCGAAAAA-TAGTTCGAAGGATTGGATCGCCCTGAA
66 ATGATGTGA-TTTCCCTCGCATGTAATGTTCGAAAAATTA-CTCGAAGGAATGGATCGTCCTGAA
* * * *
1414 TACTTTAAGGAACTGAAGCTATAAAAGAACTCGTAAAAGTTCTACAAGTTTGAAATTTCGTCCAA
129 CACTTTAAGGAACTGAAGCTAAAAAAGAACTCGTAAAAGTT-TACAAGTTCGAAAGTTCGTCCAA
* * * *
1479 GAACCAAGAGAGACACAATTCTCGCGTAAATAAGTTCTTAATTCAAAGATCAAAACTTGTTTACG
193 GAACCAAGAGAGA-ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACA
*
1544 AAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATTACTC
257 AAATG-AAAACTATTTAGACCAAATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACTC
* *
1609 GAAGGAATAGATCGTCCTGAACACTTTAAGGAATTGGAATTTAAAAAGAACTAGTAAAAGTTTGA
321 GAAGGAATAGATCGTCCTGAACACTTTAAGGAA--CGAATTTAAAAAGAACTCGTAAAAGTTTGA
* * *
1674 CAA-TTTCAGAAGTTTGTCCAACAACCAAGAGAG-AACAATTCTC
384 CAAGTTT-GGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * *
1717 ACGT-AATAAGTTTTTAATTCAAACG-CCAAAACTTGTTTAAAAAATGACAAACCT-TTTAGATC
1 ACGTAAATAAGTTTTTAATTCAAA-GACCAAAACATGTTTACAAAATGACAAA-CTATTTAGACC
* * * * * * *
1779 AAATTATGCGACTT-CCT-GATCATGTCATGTTCGAAAAATTACTCAAAGGATTAGATCG-CCTT
64 AAATGATGTGATTTCCCTCG--CATGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCC-T
* * * * * *
1841 GCATACTTTAAGGAA-TCGAAGCTATAAAAGAACTCGTAAAAGTTCAACAAGTTCTAAAGTTTGT
126 GAACACTTTAAGGAACT-GAAGCTAAAAAAGAACTCGTAAAAGTT-TACAAGTTCGAAAGTTCGT
* *
1905 CAAAGAACCAAGAGAGGAACAATTCTCAC-TTAATAAGTTTTTAATTCAAAGATCAAAACATGTT
189 CCAAGAACCAAGAGA-GAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTT
* * * *
1969 TACGAAAATAAAAATTATTTAGACCAAATGATGTGATTTCCCTTGCATGGAATGTTCGAAAAATT
253 TAC-AAAATGAAAACTATTTAGACCAAATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATT
*
2034 ACTCGAAGGAATAGATCGTCCTGAACACTTTAAGGAACTGGATTTAAAAAAGAACT-GTAAAAGT
317 ACTCGAAGGAATAGATCGTCCTGAACACTTTAAGGAAC-GAATTT-AAAAAGAACTCGTAAAAGT
* **
2098 TTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAGTAATTCTC
380 TTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * *
2146 ACGTAAATAAGATTATAATTCAAAGATCAAAACATG-TT------T----AACTATTTAGACTAA
1 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAA
* * ** * * *
2200 ATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACAAGTAGGAATGGATCGTCTTGACCA
66 ATGATGTGATTTCCCTCGCATGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCCTGAACA
* * ** * * * *
2265 CTTTAAGGATCCGAATTTAAAAAAGAACTCGTAAAAGTTTGTCAAGTTTGGAAGTTCGTCCAACA
131 CTTTAAGGAACTGAAGCTAAAAAAGAACTCGTAAAAGTTT-ACAAGTTCGAAAGTTCGTCCAAGA
* *
2330 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAACG-CCAAAACTTGTTTACAA
195 ACCAAGAGAG-AACAATTCTCACGTAAATAAGTTTTTAATTCAAA-GATCAAAACATGTTTACAA
* * * * *
2394 AATGAAAAACCT-TTTAGACCAAATTAT-ACGACTT-CCTGAGCATGTAATGTTCGAAAAATTGC
258 AATG-AAAA-CTATTTAGACCAAATGATGA-GATTTCCCT-CGCATGGAATGTTCGAAAAATTAC
* * * * * * * **
2456 TCGAAGGATTGGTTCG-CCTTGCATATTTTATGGAACCGAAGCTATAAAAGAACTCGTAAAAGTT
319 TCGAAGGAATAGATCGTCC-TGAACACTTTAAGGAA-CGAATTTA-AAAAGAACTCGTAAAAGTT
** * * * * *
2520 CAACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGGAACAGTTCTC
381 TGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* *
2567 AC-TTAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACGAAAA-GA-ACAACTATTTAGACC
1 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACATGTTTAC-AAAATGACA-AACTATTTAGACC
*
2629 AAATGATGTGATTTCCCTCGCATGTAATGTTCGAAAAATTACTCGAAGGAATAGATCGTCCTGAA
64 AAATGATGTGATTTCCCTCGCATGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCCTGAA
* * *
2694 CACTTTAAGGAACT-AGATCTAAAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCA
129 CACTTTAAGGAACTGA-AGCTAAAAAAGAACTCGTAAAAGTTT-ACAAGTTCGAAAGTTCGTCCA
* *
2758 AGAACCAAGAGAGAAGTAATTCTCACGTAAATAAGTTTATAATTCAAAGATCAAAACATGTTTAC
192 AGAACCAAGAGAGAA-CAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTAC
* *
2823 AAAATTGAAAACTATTTAGACTAAATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACA
256 AAAA-TGAAAACTATTTAGACCAAATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACT
** * * * *
2888 ATAAGGAATGGATCGTCTTGATCACTTTAAGGATCCGAATTTAAAAAAGAACTCGTAAAAGTTTG
320 CGAAGGAATAGATCGTCCTGAACACTTTAAGGA-ACGAATTT-AAAAAGAACTCGTAAAAGTTTG
* * * *
2953 TCAAGTTTTGAAGTTCGTCCAACAACAAAGAGAGAAACAATTCTC
383 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * * *
2998 ACGTAAATAAGGTTTTAATTCAATGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAA
1 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAA
* ** * * *
3063 ATGATGTGACTTGCCGAC-CATGTAATGTTCGAAAAATT-GTACGAAGGATTGGATCGTCTTGAA
66 ATGATGTGA-TTTCCCTCGCATGTAATGTTCGAAAAATTACT-CGAAGGAATGGATCGTCCTGAA
* * * * *
3126 TACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTCTACAAGTTTGAAATTTCGTCCAA
129 CACTTTAAGGAACTGAAGCTAAAAAAGAACTCGTAAAAGTT-TACAAGTTCGAAAGTTCGTCCAA
* *
3191 GAACCAAGAGAGACACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACG
193 GAACCAAGAGAGA-ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACA
*
3256 AAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATTACTC
257 AAATG-AAAACTATTTAGACCAAATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACTC
* * *
3321 GAAGGAATAGATCGTCCTGAACACTTTAAGGAACAAGATATAATAAAGAACTAGTAAAAGTTTGA
321 GAAGGAATAGATCGTCCTGAACACTTTAAGGAACGA-ATTTAA-AAAGAACTCGTAAAAGTTTGA
* *
3386 CAA-TTTCGGAAGTTTGTCCAATAACCAAGAGAGAAACAATTCTC
384 CAAGTTT-GGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
3430 ACGTAAATAAGTTTTTAAT
1 ACGTAAATAAGTTTTTAAT
Statistics
Matches: 2544, Mismatches: 364, Indels: 217
0.81 0.12 0.07
Matches are distributed among these distances:
418 3 0.00
419 134 0.05
420 147 0.06
421 56 0.02
422 2 0.00
423 185 0.07
424 171 0.07
425 6 0.00
426 1 0.00
428 45 0.02
429 157 0.06
430 279 0.11
431 896 0.35
432 453 0.18
433 9 0.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.28
Consensus pattern (427 bp):
ACGTAAATAAGTTTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAA
ATGATGTGATTTCCCTCGCATGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCCTGAACA
CTTTAAGGAACTGAAGCTAAAAAAGAACTCGTAAAAGTTTACAAGTTCGAAAGTTCGTCCAAGAA
CCAAGAGAGAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAAT
GAAAACTATTTAGACCAAATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGG
AATAGATCGTCCTGAACACTTTAAGGAACGAATTTAAAAAGAACTCGTAAAAGTTTGACAAGTTT
GGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
Done.