Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009843.1 Kokia drynarioides strain JFW-HI SEQ_124570, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 686

Length: 1144
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34


Found at i:375 original size:144 final size:144

Alignment explanation


    Indices: 115--554  Score: 711
    Period size: 144  Copynumber: 3.1  Consensus size: 144

        105 GACCTTGGCT

                                                                             
        115 CAATCCCTTCTGCTTTGGGTCAATTAACCAATCTCCAATCTCTGATCCTTTGGGGGAACCAAATC
          1 CAATCCCTTCTGCTTTGGGTCAATTAACCAATCTCCAATCTCTGATCCTTTGGGGGAACCAAATC

                                                       *                **   
        180 AATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGATTTATTTGACTCTCTCCGGCAA
         66 AATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGACTCTCTCCAACAA

              *           
        245 TAGAATTGTTGGTC
        131 TAAAATTGTTGGTC

                   *                                           *             
        259 CAATCCCCTCTGCTTTGGGTCAATTAACCAATCTCCAATCTCTGATCCTTTCGGGGAACCAAATC
          1 CAATCCCTTCTGCTTTGGGTCAATTAACCAATCTCCAATCTCTGATCCTTTGGGGGAACCAAATC

                                     *                          *            
        324 AATGGATCTATCCCATTAGAAATTGAATATTTGAGAAATTTGACTTATTTGAGTCTCTCCAACAA
         66 AATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGACTCTCTCCAACAA

                          
        389 TAAAATTGTTGGTC
        131 TAAAATTGTTGGTC

                                   *      *                                  
        403 CAATCCCTTCTGCTTTGGGTCAAGTAACCAGTCTCCAATCTCTGATCCTTTGGGGGAACCAAATC
          1 CAATCCCTTCTGCTTTGGGTCAATTAACCAATCTCCAATCTCTGATCCTTTGGGGGAACCAAATC

                                 *                                     *   * 
        468 AATGGATCTATCCCATTAGAACTTGGATATTTGAGAAATTTGACTTATTTGGA-TCTCTACAAAA
         66 AATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTT-GACTCTCTCCAACA

               * *    *   *
        532 ATAGACTTGTCGGTT
        130 ATAAAATTGTTGGTC

                    
        547 CAATCCCT
          1 CAATCCCT

        555 CTAGAAATTG


Statistics
Matches: 275,  Mismatches: 20, Indels: 2
        0.93            0.07        0.01

Matches are distributed among these distances:
 144  273  0.99
 145    2  0.01

ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34


Consensus pattern (144 bp):   
CAATCCCTTCTGCTTTGGGTCAATTAACCAATCTCCAATCTCTGATCCTTTGGGGGAACCAAATC
AATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGACTCTCTCCAACAA
TAAAATTGTTGGTC
Done.