Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009846.1 Kokia drynarioides strain JFW-HI SEQ_124573, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 629

Length: 1049
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36


Found at i:122 original size:23 final size:23

Alignment explanation


    Indices: 96--167  Score: 101
    Period size: 23  Copynumber: 3.2  Consensus size: 23

         86 AACAGTAAGT

                                   
         96 ACACATAGTGCAATTCAGTAGGC
          1 ACACATAGTGCAATTCAGTAGGC

                 *                 
        119 ACACACAGTGCAATT-AGTAGGC
          1 ACACATAGTGCAATTCAGTAGGC

            *       *    *         
        141 GCACATAGCGCAAATCAGTAGGC
          1 ACACATAGTGCAATTCAGTAGGC

                
        164 ACAC
          1 ACAC

        168 GAAGTGCGAA


Statistics
Matches: 42,  Mismatches: 6, Indels: 2
        0.84            0.12        0.04

Matches are distributed among these distances:
  22   18  0.43
  23   24  0.57

ACGTcount: A:0.36, C:0.25, G:0.22, T:0.17


Consensus pattern (23 bp):   
ACACATAGTGCAATTCAGTAGGC

Done.