Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009857.1 Kokia drynarioides strain JFW-HI SEQ_124589, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2469
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35


Found at i:1474 original size:17 final size:16

Alignment explanation


    Indices: 1435--1477  Score: 50
    Period size: 17  Copynumber: 2.6  Consensus size: 16

       1425 TATACACATT

                          * 
       1435 AAAAATATAAAAAAGA
          1 AAAAATATAAAAAACA

                           *  
       1451 AATAAATATAAAAATTCA
          1 AA-AAATATAAAAA-ACA

                     
       1469 AAAAATATA
          1 AAAAATATA

       1478 TATATAATTT


Statistics
Matches: 23,  Mismatches: 2, Indels: 3
        0.82            0.07        0.11

Matches are distributed among these distances:
  16    2  0.09
  17   18  0.78
  18    3  0.13

ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21


Consensus pattern (16 bp):   
AAAAATATAAAAAACA
Done.