Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000986.1 Kokia drynarioides strain JFW-HI SEQ_112182, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1983
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37


Found at i:1364 original size:21 final size:20

Alignment explanation


    Indices: 1327--1365  Score: 51
    Period size: 21  Copynumber: 1.9  Consensus size: 20

       1317 CTTGAGAAGT

                        *       
       1327 ATATTTTACATCCAAAAATA
          1 ATATTTTACATCAAAAAATA

                        *      
       1347 ATATTTATACATTAAAAAA
          1 ATATTT-TACATCAAAAAA

       1366 AATTACATGA


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20    6  0.38
  21   10  0.62

ACGTcount: A:0.54, C:0.10, G:0.00, T:0.36


Consensus pattern (20 bp):   
ATATTTTACATCAAAAAATA
Done.