genome.fa.s9860.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009860.1 Kokia drynarioides strain JFW-HI SEQ_124593, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  194328

Tables:   1   

This is table  1  of  1  ( 107 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1576--1633	21	2.8	21	89	0	71	31	18	25	24	1.98
1864--1907	5	8.8	5	80	9	54	0	20	2	77	0.88
1864--1900	19	2.0	20	89	10	60	0	21	0	78	0.75
2285--2358	30	2.4	29	84	4	94	33	9	35	21	1.86
6393--6464	22	3.1	22	78	11	72	6	6	19	66	1.38
6385--6447	22	2.9	21	79	6	72	7	6	20	65	1.42
6398--6471	24	3.1	24	77	11	80	8	5	16	70	1.30
6497--6618	12	10.5	12	70	10	83	9	4	17	68	1.36
6438--6619	36	5.3	32	73	16	96	9	5	17	68	1.36
6405--6544	60	2.3	60	79	8	144	9	7	17	66	1.42
6550--6619	20	3.2	20	75	15	68	10	2	17	70	1.28
6528--6619	44	2.1	45	85	2	123	9	4	16	69	1.32
6528--6632	44	2.4	43	82	6	113	11	3	16	68	1.34
13137--13181	17	2.6	17	78	3	54	24	4	2	68	1.19
24631--24734	53	2.0	53	94	0	181	36	11	22	29	1.89
31284--31336	13	4.1	13	82	0	70	43	5	0	50	1.25
32248--32277	15	1.9	16	93	6	53	53	0	0	46	1.00
32390--32445	20	2.8	21	75	8	71	57	0	0	42	0.99
32415--32474	26	2.4	26	78	8	63	51	0	3	45	1.17
32430--32498	26	3.0	22	76	16	59	47	1	2	47	1.25
36094--36342	59	4.3	59	79	8	260	36	6	23	32	1.81
36063--36287	30	7.7	29	68	15	88	36	6	25	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36095--36316	30	7.5	29	67	14	105	36	5	23	33	1.79
36329--36533	29	7.0	29	75	10	168	40	1	22	35	1.65
36329--36507	58	3.1	56	80	8	207	40	1	21	35	1.64
40788--40879	28	3.1	28	70	21	71	34	4	23	36	1.75
40785--40879	29	3.2	29	71	19	79	35	4	23	36	1.74
40740--40940	59	3.4	57	80	8	199	36	4	26	32	1.78
40860--41073	29	7.3	29	63	18	77	36	3	28	31	1.75
40923--41089	29	5.6	30	72	9	128	38	1	25	34	1.67
40945--41117	59	2.9	58	81	5	204	39	2	21	35	1.67
40923--41146	118	1.9	119	80	4	265	38	3	22	35	1.70
42223--42261	12	3.2	12	86	10	53	28	0	0	71	0.86
43041--43101	17	3.6	17	78	8	70	52	4	3	39	1.39
43065--43125	28	2.2	27	85	8	79	57	6	0	36	1.25
43306--43397	27	2.9	31	72	23	93	32	17	29	20	1.96
44089--44140	21	2.5	21	81	6	61	28	13	26	30	1.94
44921--44967	24	2.0	24	86	0	67	46	4	2	46	1.34
48640--48677	19	2.0	19	85	10	51	36	21	5	36	1.76
52152--52197	2	23.0	2	86	0	65	50	0	6	43	1.28
53520--53560	16	2.7	15	84	3	55	58	4	12	24	1.53
53882--53942	26	2.3	26	100	0	122	27	19	18	34	1.95
56835--56869	11	3.1	11	95	4	61	68	0	0	31	0.90
57665--57711	18	2.7	18	90	3	69	25	19	2	53	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63738--64070	167	2.0	164	96	1	612	42	9	15	33	1.78
66093--66150	17	3.2	17	82	7	53	50	0	0	50	1.00
66102--66232	58	2.3	59	85	6	187	45	0	1	51	1.15
67297--67348	17	3.2	15	75	17	50	55	1	0	42	1.10
71876--71922	24	2.0	24	87	8	69	6	36	2	55	1.37
72058--72129	37	1.9	38	88	8	112	54	0	0	45	0.99
72061--72118	18	3.2	18	69	23	50	56	0	0	43	0.99
72067--72138	30	2.3	32	81	11	80	54	0	1	44	1.08
73300--73350	17	3.1	16	83	13	59	25	0	5	68	1.12
80572--80596	3	8.3	3	100	0	50	32	0	0	68	0.90
83598--83658	28	2.2	28	88	5	88	27	11	29	31	1.92
83609--83716	28	3.8	28	77	13	105	33	5	28	32	1.80
83741--83829	28	3.1	28	74	3	88	25	4	30	39	1.76
83754--83843	29	3.1	30	74	7	96	25	3	34	36	1.73
83754--84164	30	13.9	30	71	15	218	34	3	25	36	1.73
83811--84194	30	13.0	29	73	12	239	36	3	23	36	1.73
83754--84194	59	7.5	59	81	4	394	34	3	25	36	1.74
83807--84194	178	2.2	177	85	5	514	35	3	23	36	1.74
85258--85309	18	2.9	18	82	0	50	32	7	1	57	1.38
93096--93162	27	2.5	27	87	0	89	22	31	14	31	1.94
93940--94024	44	2.0	43	84	11	113	34	2	16	47	1.60
97515--97556	18	2.3	18	80	8	50	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101426--101531	55	1.9	56	82	5	135	27	17	20	33	1.96
101549--101680	42	3.1	41	77	12	135	28	11	21	38	1.88
102552--102605	17	3.5	16	71	23	53	61	1	12	24	1.42
102545--102620	29	2.6	29	87	4	98	63	1	9	26	1.32
102558--102648	30	3.1	30	87	4	114	61	4	7	26	1.42
103125--103159	12	2.9	12	91	0	61	17	22	31	28	1.96
106247--106904	57	11.2	57	76	10	510	34	17	18	29	1.94
106247--106897	174	3.7	172	84	6	746	34	17	18	29	1.94
106298--106939	117	5.5	117	81	6	592	34	16	18	29	1.93
107675--107885	106	2.0	106	96	0	386	33	23	9	33	1.88
107877--107935	29	2.1	27	82	11	75	30	22	13	33	1.92
108280--108346	33	2.0	33	100	0	134	31	8	14	44	1.76
108287--108358	33	2.2	33	90	5	110	31	9	16	41	1.81
110282--110316	14	2.4	14	85	4	52	51	0	0	48	1.00
110279--110323	22	2.0	22	86	0	63	53	0	0	46	1.00
118038--118071	2	17.0	2	87	0	50	0	55	0	44	0.99
120771--120796	2	13.0	2	100	0	52	50	0	0	50	1.00
136202--136242	21	2.0	21	100	0	82	24	7	4	63	1.40
138529--138582	25	2.2	25	80	12	58	29	1	1	66	1.12
138537--138584	25	1.9	25	87	8	71	29	2	2	66	1.14
138563--138605	18	2.4	18	76	0	50	27	2	2	67	1.15
141338--141373	18	1.9	18	88	5	54	33	2	0	63	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141319--141388	28	2.4	29	83	9	81	30	5	4	60	1.39
142137--142219	12	6.9	12	67	9	53	39	13	14	32	1.85
142143--142208	24	2.8	23	81	2	78	40	15	13	30	1.85
145181--145214	18	1.9	18	88	5	52	29	0	5	64	1.17
149223--149265	21	2.1	21	91	4	70	25	0	2	72	0.97
149231--149255	12	2.1	12	100	0	50	24	0	0	76	0.80
149213--149242	8	3.8	8	100	0	60	36	0	0	63	0.95
149215--149264	8	5.4	9	82	15	50	28	0	2	70	0.99
156448--156711	131	2.0	131	96	0	492	37	21	9	31	1.86
158442--158466	12	2.1	12	100	0	50	44	24	16	16	1.86
164145--164176	2	16.0	2	93	0	55	0	46	3	50	1.17
173430--173469	19	2.1	19	100	0	80	55	10	10	25	1.64
175411--175473	24	2.6	24	82	0	81	49	9	14	26	1.74
177277--177319	21	2.0	21	86	0	59	41	11	20	25	1.86
178198--178249	2	26.5	2	80	3	61	50	7	0	42	1.31
184912--184963	25	2.1	24	82	10	61	38	0	5	55	1.24
184983--185021	20	1.9	21	84	5	53	46	2	2	48	1.29
188951--188978	9	3.1	9	100	0	56	75	0	25	0	0.81
194070--194106	9	4.3	9	83	10	51	54	0	45	0	1.00

Tables:   1

The End!