Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009861.1 Kokia drynarioides strain JFW-HI SEQ_124594, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2552
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:2410 original size:21 final size:21

Alignment explanation


    Indices: 2384--2426  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2374 TAGGGTCCAT

                         *       
       2384 TTGCCCCGGAAGAGTAGAGTA
          1 TTGCCCCGGAAGAATAGAGTA

                  *   *          
       2405 TTGCCCGGGAGGAATAGAGTA
          1 TTGCCCCGGAAGAATAGAGTA

             
       2426 T
          1 T

       2427 CGCGATGGTT


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.28, C:0.16, G:0.35, T:0.21


Consensus pattern (21 bp):   
TTGCCCCGGAAGAATAGAGTA

Found at i:2486 original size:44 final size:45

Alignment explanation


    Indices: 2436--2550  Score: 151
    Period size: 45  Copynumber: 2.6  Consensus size: 45

       2426 TCGCGATGGT

                      *  *                   *           
       2436 TCGTCAAACTCAGCCTGATATCCTT-CCCTAAGTATTGCAGTGGC
          1 TCGTCAAACTGAGGCTGATATCCTTGCCCTAAGCATTGCAGTGGC

                    *                 * * *        *     
       2480 TCGTCAAATTGAGGCTGATATCCTTGGCTTGAGCATTGCGGTGGC
          1 TCGTCAAACTGAGGCTGATATCCTTGCCCTAAGCATTGCAGTGGC

                                      
       2525 TCGTCAAACTGAGGCTGATATCCTTG
          1 TCGTCAAACTGAGGCTGATATCCTTG

       2551 GC


Statistics
Matches: 61,  Mismatches: 9, Indels: 1
        0.86            0.13        0.01

Matches are distributed among these distances:
  44   22  0.36
  45   39  0.64

ACGTcount: A:0.21, C:0.24, G:0.24, T:0.30


Consensus pattern (45 bp):   
TCGTCAAACTGAGGCTGATATCCTTGCCCTAAGCATTGCAGTGGC
Done.