Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009865.1 Kokia drynarioides strain JFW-HI SEQ_124599, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2001
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.38

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:757 original size:24 final size:24

Alignment explanation


    Indices: 685--759  Score: 105
    Period size: 24  Copynumber: 3.1  Consensus size: 24

        675 AGAAATAATC

                 *         *       *
        685 TTTCAGTTAAACTCTGTTTATTTA
          1 TTTCAATTAAACTCTATTTATTTG

                                    
        709 TTTCAATTAAACTCTATTTATTTG
          1 TTTCAATTAAACTCTATTTATTTG

                           *    *   
        733 TTTCAATTAAACTCTTTTTAGTTG
          1 TTTCAATTAAACTCTATTTATTTG

               
        757 TTT
          1 TTT

        760 GAGTCAAATT


Statistics
Matches: 46,  Mismatches: 5, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  24   46  1.00

ACGTcount: A:0.25, C:0.12, G:0.07, T:0.56


Consensus pattern (24 bp):   
TTTCAATTAAACTCTATTTATTTG
Done.