Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009866.1 Kokia drynarioides strain JFW-HI SEQ_124600, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6034
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.31


Found at i:5977 original size:36 final size:37

Alignment explanation


    Indices: 5906--5982  Score: 86
    Period size: 36  Copynumber: 2.1  Consensus size: 37

       5896 AAGATTTTTC

                 *   *                           
       5906 ATAATTTAAGTTATTATTAATTAATATTAGAATATA-
          1 ATAATATAAATTATTATTAATTAATATTAGAATATAT

                                   **      *      
       5942 ATAATATAAATTATTATTTAATTGGTATTA-TATATAT
          1 ATAATATAAATTATTA-TTAATTAATATTAGAATATAT

                
       5979 ATAA
          1 ATAA

       5983 ATTAAAGCCA


Statistics
Matches: 34,  Mismatches: 5, Indels: 3
        0.81            0.12        0.07

Matches are distributed among these distances:
  36   19  0.56
  37   15  0.44

ACGTcount: A:0.47, C:0.00, G:0.05, T:0.48


Consensus pattern (37 bp):   
ATAATATAAATTATTATTAATTAATATTAGAATATAT
Done.